| Aseltine School | 1.8 |
49 | 28.6% | 18.4% | 44.9% | 8.2% | - |
| Marjorie Cook Education Center | 3.1 |
110 | 84.5% | 7.3% | 4.5% | 0.9% | 2.7% |
| Rock Academy, The | 3.5 |
244 | 52.0% | 17.6% | 22.1% | 1.2% | 7.0% |
| Tabernacle Christian Academy | 4.5 |
75 | 22.7% | 30.7% | 36.0% | 2.7% | 8.0% |
| San Diego Academy | 5.4 |
333 | 20.1% | 39.9% | 9.0% | - | 30.9% |
| Sam & Rose Stein Education Center | 5.5 |
189 | 41.3% | 28.0% | 19.6% | 0.5% | 10.6% |
| Faithful Ambassadors Bible | 6.0 |
117 | 2.6% | 4.3% | - | - | 93.2% |
| South Bay Christian Academy | 7.0 |
42 | 26.2% | 42.9% | 26.2% | - | 4.8% |
| Excelsior Academy | 7.0 |
63 | 88.9% | 6.3% | 3.2% | 1.6% | - |
| Sam & Rose Stein Education Center | 7.0 |
62 | 25.8% | 58.1% | - | - | 16.1% |
| Horizon Elementary School | 7.3 |
842 | 70.0% | 10.0% | 10.1% | - | 10.0% |
| Rainbow Christian | 7.5 |
6 | 100.0% | - | - | - | - |
| Dunamis Learning Center | 7.5 |
8 | 62.5% | 25.0% | - | - | 12.5% |
| Heritage Christian School | 7.8 |
868 | - | - | 100.0% | - | - |
| Lighthouse Christian Academy | 7.8 |
120 | 45.0% | 30.0% | 20.0% | - | 5.0% |
| Kuyper Preparatory School | 8.1 |
126 | 51.6% | 23.0% | 11.9% | 3.2% | 10.3% |
| True Faith Academy | 8.1 |
24 | 66.7% | 20.8% | - | - | 12.5% |
| Springall Academy | 9.7 |
71 | 43.7% | 25.4% | 22.5% | 2.8% | 5.6% |
| Heartland Christian | 10.0 |
137 | 73.7% | 19.0% | 5.1% | - | 2.2% |
| La Mesa Christian School | 10.5 |
63 | 71.4% | 11.1% | 12.7% | 1.6% | 3.2% |
| Otay Christian Academy | 10.6 |
37 | 2.7% | 97.3% | - | - | - |
| Midway Baptist School | 10.9 |
342 | 27.2% | 67.0% | 2.6% | - | 3.2% |
| La Jolla Country Day School | 11.0 |
973 | 73.7% | 10.6% | 5.1% | - | 10.6% |
| Calvary Christian Academy | 12.3 |
400 | 39.8% | 42.0% | 5.5% | - | 12.8% |
| Calvary Christian Jr/sr High School | 12.3 |
465 | 62.4% | 1.3% | 34.2% | - | 2.2% |
| Del Rey Schools | 13.0 |
28 | 75.0% | 17.9% | - | 7.1% | - |
| Sierra Schools Of California | 13.1 |
39 | 79.5% | 7.7% | 5.1% | - | 7.7% |
| New Life Christian Academy | 13.3 |
51 | - | 100.0% | - | - | - |
| San Diego Jewish Academy | 14.9 |
622 | 67.5% | 32.2% | 0.2% | - | 0.2% |
| Home School Alternative, The | 16.5 |
8 | 62.5% | 37.5% | - | - | - |
| Winston School | 16.7 |
100 | 85.0% | 5.0% | 7.0% | 1.0% | 2.0% |
| Santa Fe Montessori School | 19.0 |
200 | 100.0% | - | - | - | - |
| Santa Fe Christian Schools | 19.1 |
986 | 88.8% | 5.1% | 1.0% | - | 5.1% |
| Cal Coast Academy | 19.3 |
24 | 95.8% | 4.2% | - | - | - |
| Maranatha Christian School | 20.5 |
504 | 58.7% | 14.7% | 5.0% | 2.0% | 19.6% |
| Encinitas Country Day School | 21.1 |
249 | 85.5% | 6.0% | 2.4% | 1.6% | 4.4% |
| The Grauer School | 21.6 |
121 | 89.3% | 2.5% | - | - | 8.3% |
