| Apostolic Christian Academy | 0.0 |
26 | - | 96.2% | 3.8% | - | - |
| Samuel N Hancock School | 2.5 |
22 | 9.1% | 4.5% | 86.4% | - | - |
| Children's Home Of Stockton Nps | 2.6 |
106 | 44.3% | 16.0% | 36.8% | 0.9% | 1.9% |
| New Harvest Christian School | 4.1 |
29 | - | 100.0% | - | - | - |
| Stockton Baptist School | 6.2 |
54 | 53.7% | 18.5% | 9.3% | - | 18.5% |
| Stockton Christian School | 7.3 |
271 | 18.1% | 62.0% | 12.2% | 0.7% | 7.0% |
| New World Montessori | 7.6 |
15 | 13.3% | 73.3% | 6.7% | - | 6.7% |
| Central Valley Baptist School | 9.8 |
41 | 29.3% | 53.7% | - | - | 17.1% |
| South San Joaquin Education Center | 11.0 |
19 | 47.4% | 10.5% | 36.8% | 5.3% | - |
| North Valley School | 13.2 |
73 | 53.4% | 16.4% | 26.0% | - | 4.1% |
| Ripon Christian Schools | 15.7 |
694 | 92.1% | 4.9% | 1.4% | - | 1.6% |
| Mokelumne River School | 15.9 |
215 | 42.3% | 44.7% | - | 6.5% | 6.5% |
| Modesto Christian School | 18.3 |
653 | 90.0% | 4.6% | 3.1% | - | 2.3% |
| Modesto Christian High School | 18.5 |
653 | 64.9% | 15.0% | 9.0% | 2.0% | 9.0% |
| Brethren Heritage School | 20.6 |
107 | 98.1% | - | - | - | 1.9% |
| St Felicissimus School | 20.7 |
12 | 33.3% | 66.7% | - | - | - |
| Wood Colony Brethren School | 20.9 |
100 | 95.0% | 4.0% | - | - | 1.0% |
| Tobinworld Ii | 21.9 |
69 | 36.2% | 13.0% | 50.7% | - | - |
| Big Valley Christian | 22.2 |
855 | 83.3% | 11.0% | 3.2% | - | 2.6% |
| Mountain View Baptist Academy | 23.4 |
16 | 100.0% | - | - | - | - |
| Riverbank Christian Academy | 23.6 |
6 | - | 100.0% | - | - | - |
| New Harvest Christian | 24.1 |
25 | 28.0% | 72.0% | - | - | - |
| Gateway Christian School | 24.1 |
171 | 70.2% | 15.2% | 9.4% | 2.3% | 2.9% |
| Heritage Baptist Academy | 24.8 |
145 | 29.7% | 37.9% | 17.9% | - | 14.5% |
