| North Valley School | 0.0 |
Special education | KG-12 | 73 | 10.4 | Nonsectarian |
| Mokelumne River School | 6.1 |
Regular elementary or secondary | Pre-KG-12 | 215 | 11.9 | Christian (no specific denomination) |
| Stockton Baptist School | 7.2 |
Regular elementary or secondary | Pre-KG-10 | 54 | 6.3 | Baptist |
| Stockton Christian School | 7.6 |
Regular elementary or secondary | KG-12 | 271 | 19.4 | Christian (no specific denomination) |
| New Harvest Christian School | 9.2 |
Regular elementary or secondary | Pre-KG-12 | 29 | 4.9 | Christian (no specific denomination) |
| New World Montessori | 9.9 |
Montessori | Ungraded-Ungraded | 15 | 7.5 | Nonsectarian |
| Children's Home Of Stockton Nps | 10.7 |
Special education | 3-12 | 106 | 8.8 | Nonsectarian |
| Samuel N Hancock School | 10.7 |
Regular elementary or secondary | KG-12 | 22 | 5.5 | Pentecostal |
| Apostolic Christian Academy | 13.2 |
Regular elementary or secondary | 2-12 | 26 | 8.7 | Assembly of God |
| South San Joaquin Education Center | 20.5 |
Special education | 6-12 | 19 | 9.5 | Nonsectarian |
| Central Valley Baptist School | 21.0 |
Regular elementary or secondary | KG-12 | 41 | 5.4 | Baptist |
| Wilton Christian School | 21.8 |
Regular elementary or secondary | Pre-KG-12 | 72 | 6.7 | Baptist |
| Small Cloud Christian School | 23.2 |
Regular elementary or secondary | KG-11 | 13 | 6.5 | Seventh-Day Adventist |
| Ripon Christian Schools | 24.6 |
Regular elementary or secondary | KG-12 | 694 | 16.0 | Calvinist |
