| St Peter Lutheran School | 7.6 |
Regular elementary or secondary | Pre-KG-8 | 19 | 7.3 | Wisconsin Evangelical Lutheran Synod |
| Kindercare Learning Center Inc | 9.0 |
Early childhood program/child care center | Pre-KG-KG | 5 | 5.0 | Nonsectarian |
| Brighter Futures Therapeutic Learning Center | 9.2 |
Special education | 4-4 | 3 | 3.0 | Seventh-Day Adventist |
| Orangeburg Christian School | 9.9 |
Regular elementary or secondary | Pre-KG-8 | 75 | 9.9 | Baptist |
| Sierra Vista Elementary | 10.1 |
Special education | KG-4 | 23 | 11.5 | Nonsectarian |
| Our Lady Of Fatima Elem School | 10.1 |
Regular elementary or secondary | KG-8 | 261 | 23.5 | Roman Catholic |
| Grace Lutheran School | 10.4 |
Regular elementary or secondary | Pre-KG-8 | 128 | 11.8 | Lutheran Church - Missouri Synod |
| A Step Ahead Academic Academy | 10.4 |
Early childhood program/child care center | Pre-KG-KG | 4 | 2.0 | Nonsectarian |
| Montessori School Of Modesto | 10.5 |
Montessori | Pre-KG-KG | 16 | 2.2 | Nonsectarian |
| Abc Reign Accelerated Learning Private School | 10.7 |
Regular elementary or secondary | KG-6 | 16 | 16.0 | Nonsectarian |
| Hughson Christian School | 11.0 |
Regular elementary or secondary | Pre-KG-8 | 27 | 8.2 | Church of Christ |
| Sierra Vista Learning Center | 11.2 |
Special education | 1-8 | 39 | 9.8 | Nonsectarian |
| Kindercare | 11.6 |
Early childhood program/child care center | Pre-KG-KG | 4 | 2.1 | Nonsectarian |
| Small World Christian School | 11.8 |
Regular elementary or secondary | Pre-KG-3 | 46 | 15.3 | Christian (no specific denomination) |
| Modesto Christian Elementary School | 12.0 |
Regular elementary or secondary | KG-4 | 160 | 17.0 | Assembly of God |
| St Stanislaus Elem School | 12.6 |
Regular elementary or secondary | Pre-KG-8 | 223 | 15.0 | Roman Catholic |
| Kiddie Kingdom Daycare Center | 14.2 |
Early childhood program/child care center | Pre-KG-KG | 15 | 15.0 | Nonsectarian |
| Manteca Christian School | 18.1 |
Regular elementary or secondary | Pre-KG-8 | 121 | 13.6 | Assembly of God |
| Sacred Heart School | 18.7 |
Regular elementary or secondary | KG-8 | 247 | 17.0 | Roman Catholic |
| St Anthony School | 19.0 |
Regular elementary or secondary | Pre-KG-8 | 268 | 23.5 | Roman Catholic |
| Plumfield Christian Academy | 19.7 |
Regular elementary or secondary | KG-8 | 102 | 11.6 | Christian (no specific denomination) |
| Valley Oaks School | 20.0 |
Special education | 6-8 | 15 | 7.5 | Nonsectarian |
| Always Friends Preschool Childcare | 20.1 |
Early childhood program/child care center | Pre-KG-KG | 7 | 7.8 | Nonsectarian |
| Manteca Adventist Christian School | 20.3 |
Regular elementary or secondary | 1-8 | 15 | 15.0 | Seventh-Day Adventist |
| Stockton Seventh-day Adventist | 23.9 |
Regular elementary or secondary | 2-8 | 14 | 14.0 | Seventh-Day Adventist |
| Stockton Sda School | 23.9 |
Regular elementary or secondary | 2-8 | 14 | 14.0 | Seventh-Day Adventist |
