| Able Academy | 2.5 |
Special education | Pre-KG-2 | 13 | 1.6 | Nonsectarian |
| Moorings Presbyterian Preschool | 2.9 |
Early childhood program/child care center | Pre-KG-Trans. KG | 7 | 5.4 | Presbyterian |
| Naples Sda School | 5.1 |
Regular elementary or secondary | Pre-KG-8 | 26 | 8.7 | Seventh-Day Adventist |
| The Village School | 5.1 |
Regular elementary or secondary | Pre-KG-8 | 258 | 12.3 | Methodist |
| Naples Christian Academy | 5.5 |
Regular elementary or secondary | Pre-KG-8 | 156 | 10.5 | Christian (no specific denomination) |
| St Elizabeth Seton School | 6.2 |
Regular elementary or secondary | Pre-KG-8 | 208 | 14.2 | Roman Catholic |
| Grace Community School | 6.4 |
Regular elementary or secondary | KG-5 | 71 | 23.7 | Other |
| Cedar Montessori School | 9.5 |
Montessori | Pre-KG-5 | 36 | 7.2 | Nonsectarian |
| Eagle's Nest Christian Academy | 10.3 |
Regular elementary or secondary | Pre-KG-5 | 12 | 2.0 | Christian (no specific denomination) |
| Royal Palm Academy | 10.8 |
Regular elementary or secondary | Pre-KG-8 | 159 | 8.8 | Roman Catholic |
| Christ Community Lutheran School | 10.8 |
Regular elementary or secondary | Pre-KG-8 | 53 | 8.4 | Lutheran Church - Missouri Synod |
| Island Montessori Academy | 13.5 |
Montessori | Pre-KG-KG | 1 | 0.4 | Nonsectarian |
| Grace Community School | 14.8 |
Early childhood program/child care center | Pre-KG-KG | 14 | 4.8 | Christian (no specific denomination) |
