| St Paul Lutheran School | 0.0 |
Regular elementary or secondary | Pre-KG-8 | 74 | 9.7 | Lutheran Church - Missouri Synod |
| Xavier Elementary School | 0.1 |
Regular elementary or secondary | Pre-KG-8 | 262 | 14.1 | Roman Catholic |
| Open Door Christian School | 13.6 |
Regular elementary or secondary | KG-8 | 117 | 9.0 | Baptist |
| St Patrick School | 15.6 |
Regular elementary or secondary | Pre-KG-8 | 328 | 13.2 | Roman Catholic |
| V Lindsay Sda School | 19.0 |
Regular elementary or secondary | KG-8 | 39 | 8.7 | Seventh-Day Adventist |
| Kiddie Kollege Primary | 20.1 |
Regular elementary or secondary | Pre-KG-3 | 33 | 10.0 | Methodist |
| Trinity Lutheran School | 20.3 |
Regular elementary or secondary | Pre-KG-8 | 95 | 12.5 | Lutheran Church - Missouri Synod |
| Atchison Catholic Elementary S | 20.3 |
Regular elementary or secondary | KG-8 | 242 | 12.7 | Roman Catholic |
| Sacred Heart School | 20.6 |
Regular elementary or secondary | Pre-KG-8 | 359 | 17.0 | Roman Catholic |
| Resurrection Catholic School | 20.7 |
Regular elementary or secondary | KG-8 | 343 | 11.4 | Roman Catholic |
| Our Lady Of Unity School | 22.9 |
Regular elementary or secondary | KG-8 | 138 | 12.4 | Roman Catholic |
| St Joseph Elementary School | 23.2 |
Regular elementary or secondary | KG-8 | 560 | 17.0 | Roman Catholic |
| Hope Lutheran School | 23.6 |
Regular elementary or secondary | KG-8 | 159 | 14.6 | Lutheran Church - Missouri Synod |
| Holy Name School | 24.0 |
Regular elementary or secondary | Pre-KG-8 | 157 | 12.8 | Roman Catholic |
| Good Shepherd School | 24.7 |
Regular elementary or secondary | KG-8 | 466 | 20.3 | Roman Catholic |
