| Genesee Academy | 4.6 |
Regular elementary or secondary | Pre-KG-8 | 135 | 8.9 | Islamic |
| First Flint Sda School | 5.6 |
Regular elementary or secondary | 2-6 | 5 | 3.9 | Seventh-Day Adventist |
| Kingdom Academy | 5.9 |
Regular elementary or secondary | Pre-KG-6 | 28 | 3.5 | Christian (no specific denomination) |
| St Paul Lutheran School | 7.0 |
Regular elementary or secondary | Pre-KG-8 | 188 | 13.5 | Lutheran Church - Missouri Synod |
| Dukette Catholic School | 7.3 |
Regular elementary or secondary | Pre-KG-8 | 36 | 6.0 | Roman Catholic |
| Fairhaven Sda School | 7.5 |
Regular elementary or secondary | 1-8 | 9 | 4.7 | Seventh-Day Adventist |
| St Pius X School | 7.6 |
Regular elementary or secondary | Pre-KG-8 | 153 | 12.1 | Roman Catholic |
| St Mary's School | 8.7 |
Regular elementary or secondary | Pre-KG-8 | 117 | 12.2 | Roman Catholic |
| Alpha Montessori School | 9.2 |
Montessori | Pre-KG-Trans. KG | 15 | 7.5 | Nonsectarian |
| Morgans Early Learning Center | 11.3 |
Early childhood program/child care center | Pre-KG-KG | 26 | 26.0 | Nonsectarian |
| St Mark Lutheran School | 12.1 |
Regular elementary or secondary | Pre-KG-8 | 59 | 11.8 | Lutheran Church - Missouri Synod |
| Holy Rosary Catholic School | 12.4 |
Regular elementary or secondary | KG-8 | 97 | 16.2 | Roman Catholic |
| Good Shepherd Lutheran School | 13.7 |
Regular elementary or secondary | Pre-KG-8 | 25 | 6.4 | Wisconsin Evangelical Lutheran Synod |
| Holy Family Elementary School | 15.0 |
Regular elementary or secondary | Pre-KG-8 | 496 | 20.4 | Roman Catholic |
| Zion Lutheran School | 15.2 |
Regular elementary or secondary | Pre-KG-8 | 25 | 8.1 | Wisconsin Evangelical Lutheran Synod |
| Our Lady Of Perpetual Help School | 15.8 |
Regular elementary or secondary | Pre-KG-8 | 67 | 9.6 | Roman Catholic |
| Owosso Sda School | 16.2 |
Regular elementary or secondary | KG-8 | 25 | 12.5 | Seventh-Day Adventist |
| Montessori Academy | 16.9 |
Montessori | Pre-KG-KG | 11 | 2.8 | Nonsectarian |
| St Paul School | 17.1 |
Regular elementary or secondary | KG-8 | 154 | 12.9 | Roman Catholic |
| Salem Lutheran School | 17.2 |
Regular elementary or secondary | Pre-KG-8 | 73 | 14.6 | Wisconsin Evangelical Lutheran Synod |
| Fenton Montessori Academy | 18.6 |
Montessori | Pre-KG-Trans. KG | 33 | 16.5 | Nonsectarian |
| St Lorenz Lutheran | 19.4 |
Regular elementary or secondary | Pre-KG-8 | 429 | 17.2 | Lutheran Church - Missouri Synod |
| St John Elementary School | 19.8 |
Regular elementary or secondary | KG-8 | 488 | 21.1 | Roman Catholic |
| Christ Lutheran School | 20.7 |
Regular elementary or secondary | KG-8 | 18 | 9.0 | Wisconsin Evangelical Lutheran Synod |
| St Paul Lutheran School | 21.8 |
Regular elementary or secondary | Pre-KG-8 | 221 | 18.4 | Lutheran Church - Missouri Synod |
| Immanuel Lutheran School | 23.8 |
Regular elementary or secondary | Pre-KG-8 | 75 | 15.3 | Lutheran Church - Missouri Synod |
| Ss Peter And Paul Catholic School | 24.4 |
Regular elementary or secondary | Pre-KG-8 | 54 | 8.4 | Roman Catholic |
| Holy Cross Lutheran School | 25.0 |
Regular elementary or secondary | Pre-KG-8 | 128 | 11.6 | Lutheran Church - Missouri Synod |
