| Our Lady Of The Prairie School | 0.2 |
Regular elementary or secondary | Pre-KG-6 | 50 | 10.0 | Roman Catholic |
| St John The Baptist | 7.4 |
Regular elementary or secondary | Pre-KG-6 | 123 | 12.9 | Roman Catholic |
| Zion Lutheran School | 8.4 |
Regular elementary or secondary | Pre-KG-8 | 66 | 12.2 | Lutheran Church - Missouri Synod |
| St Bernard Elementary School | 10.4 |
Regular elementary or secondary | Pre-KG-6 | 48 | 8.6 | Roman Catholic |
| St Wenceslaus School | 10.8 |
Regular elementary or secondary | Pre-KG-8 | 321 | 16.4 | Roman Catholic |
| St Anne Elementary School | 13.2 |
Regular elementary or secondary | KG-6 | 65 | 8.6 | Roman Catholic |
| Emanuel Lutheran School | 13.3 |
Regular elementary or secondary | Pre-KG-8 | 77 | 12.0 | Lutheran Church - Missouri Synod |
| St John S Lutheran School | 13.3 |
Regular elementary or secondary | Pre-KG-8 | 117 | 16.7 | Lutheran Church - Missouri Synod |
| Guardian Angels Elem School | 13.6 |
Regular elementary or secondary | Pre-KG-8 | 216 | 12.7 | Roman Catholic |
| St John's Lutheran School | 13.9 |
Regular elementary or secondary | Pre-KG-8 | 235 | 13.2 | Lutheran Church - Missouri Synod |
| Step By Step Montessori | 14.7 |
Montessori | KG-KG | 24 | 24.0 | Nonsectarian |
| Trinity Lutheran School | 15.5 |
Regular elementary or secondary | Pre-KG-8 | 271 | 16.6 | Lutheran Church - Missouri Synod |
| Jonathan Montessori School | 15.5 |
Montessori | Pre-KG-KG | 18 | 6.0 | Nonsectarian |
| Holy Redeemer Elem School | 15.6 |
Regular elementary or secondary | Pre-KG-8 | 93 | 10.3 | Roman Catholic |
| St Josephs School | 15.6 |
Regular elementary or secondary | Pre-KG-8 | 317 | 13.8 | Roman Catholic |
| St Paul Lutheran School | 15.9 |
Regular elementary or secondary | Pre-KG-8 | 51 | 12.8 | Wisconsin Evangelical Lutheran Synod |
| Shakopee Area Catholic School | 17.1 |
Regular elementary or secondary | Pre-KG-8 | 741 | 17.2 | Roman Catholic |
| St Michael School | 17.5 |
Regular elementary or secondary | Pre-KG-8 | 486 | 17.4 | Roman Catholic |
| Children Of Tomorrow | 18.7 |
Early childhood program/child care center | Pre-KG-KG | 6 | 6.0 | Nonsectarian |
| St Paul's Lutheran School | 18.8 |
Regular elementary or secondary | Pre-KG-6 | 46 | 8.7 | Lutheran Church - Missouri Synod |
| Zion Lutheran School | 19.2 |
Regular elementary or secondary | Pre-KG-8 | 57 | 9.5 | Lutheran Church - Missouri Synod |
| St Hubert Elementary School | 19.5 |
Regular elementary or secondary | KG-8 | 690 | 18.6 | Roman Catholic |
| Holy Cross Catholic School | 19.7 |
Regular elementary or secondary | Pre-KG-8 | 155 | 13.0 | Roman Catholic |
| Living Hope Lutheran School | 19.8 |
Regular elementary or secondary | Pre-KG-4 | 94 | 20.4 | Wisconsin Evangelical Lutheran Synod |
| Chapel Hill Academy | 20.1 |
Regular elementary or secondary | KG-8 | 363 | 16.6 | Christian (no specific denomination) |
| St Mark Lutheran School | 20.6 |
Regular elementary or secondary | Pre-KG-8 | 30 | 9.7 | Lutheran Church - Missouri Synod |
| Our Savior Lutheran School | 20.7 |
Regular elementary or secondary | KG-8 | 148 | 9.9 | Lutheran Church - Missouri Synod |
| St John The Baptist School | 21.4 |
Regular elementary or secondary | Pre-KG-8 | 144 | 13.2 | Roman Catholic |
| St Pius X Catholic School | 21.4 |
Regular elementary or secondary | Pre-KG-6 | 77 | 12.8 | Roman Catholic |
| Spring Hill School | 21.5 |
Special program emphasis | Pre-KG-8 | 98 | 6.7 | Nonsectarian |
| First Lutheran School | 21.6 |
Regular elementary or secondary | 1-8 | 140 | 14.0 | Lutheran Church - Missouri Synod |
| Our Lady Of The Lake School | 22.0 |
Regular elementary or secondary | KG-8 | 171 | 11.7 | Roman Catholic |
| Calvary Memorial Christian School | 22.6 |
Regular elementary or secondary | Pre-KG-8 | 71 | 8.4 | Christian (no specific denomination) |
| Bloomington Lutheran School | 22.7 |
Regular elementary or secondary | Pre-KG-8 | 203 | 18.3 | Wisconsin Evangelical Lutheran Synod |
| St Peter Lutheran School | 23.0 |
Regular elementary or secondary | Pre-KG-8 | 42 | 12.3 | Wisconsin Evangelical Lutheran Synod |
| John Ireland School | 23.0 |
Regular elementary or secondary | KG-6 | 90 | 11.2 | Roman Catholic |
| American Montessori Inc (the) | 23.1 |
Early childhood program/child care center | Pre-KG-KG | 12 | 12.0 | Nonsectarian |
| Immanuel Lutheran School | 23.1 |
Regular elementary or secondary | Pre-KG-8 | 38 | 7.9 | Lutheran Church - Missouri Synod |
| Christ Community Lutheran School | 23.2 |
Regular elementary or secondary | Pre-KG-8 | 105 | 13.8 | Lutheran Church - Missouri Synod |
| St John The Baptist Catholic School | 23.4 |
Regular elementary or secondary | Pre-KG-8 | 628 | 19.1 | Roman Catholic |
| Eden Prairie Montessori Learning Center | 23.7 |
Montessori | Pre-KG-KG | 5 | 2.5 | Nonsectarian |
| Abc International Montessori Academy | 23.9 |
Montessori | Pre-KG-6 | 31 | 8.0 | Nonsectarian |
| Grace Lutheran Christian School | 25.0 |
Regular elementary or secondary | KG-6 | 13 | 5.4 | Christian (no specific denomination) |
