| Immanuel Lutheran School | 0.0 |
Regular elementary or secondary | Pre-KG-8 | 46 | 7.7 | Lutheran Church - Missouri Synod |
| Greene Valley School | 13.8 |
Regular elementary or secondary | KG-8 | 23 | 12.1 | Seventh-Day Adventist |
| St Felix School | 16.4 |
Regular elementary or secondary | Pre-KG-6 | 98 | 9.5 | Roman Catholic |
| St Francis Of Assisi Elementary School | 17.2 |
Regular elementary or secondary | Pre-KG-8 | 407 | 18.2 | Roman Catholic |
| Rochester Central Lutheran School | 17.3 |
Regular elementary or secondary | Pre-KG-8 | 276 | 12.7 | Lutheran Church - Missouri Synod |
| Resurrection Lutheran School | 17.5 |
Regular elementary or secondary | KG-8 | 119 | 18.9 | Wisconsin Evangelical Lutheran Synod |
| St Pius X School | 18.0 |
Regular elementary or secondary | KG-4 | 231 | 17.0 | Roman Catholic |
| Holy Spirit School | 18.6 |
Regular elementary or secondary | KG-8 | 328 | 15.7 | Roman Catholic |
| Immanuel Lutheran School | 18.7 |
Regular elementary or secondary | Pre-KG-8 | 51 | 10.2 | Lutheran Church - Missouri Synod |
| St John's Ev Lutheran School | 19.3 |
Regular elementary or secondary | Pre-KG-8 | 84 | 14.0 | Wisconsin Evangelical Lutheran Synod |
| St Johns Lutheran School | 20.2 |
Regular elementary or secondary | Pre-KG-8 | 56 | 9.5 | Wisconsin Evangelical Lutheran Synod |
| Rochester Montessori School | 20.8 |
Montessori | Pre-KG-6 | 62 | 5.7 | Nonsectarian |
