| All Saints Catholic School | 7.8 |
Regular elementary or secondary | Pre-KG-4 | 18 | 6.0 | Roman Catholic |
| Sacred Heart School | 10.2 |
Regular elementary or secondary | Pre-KG-4 | 158 | 15.3 | Roman Catholic |
| Mount Olive Lutheran School | 13.9 |
Regular elementary or secondary | KG-8 | 147 | 15.8 | Evangelical Lutheran Church in America |
| Trinity Lutheran School | 15.7 |
Regular elementary or secondary | KG-8 | 29 | 9.3 | Lutheran Church - Missouri Synod |
| Risen Savior Lutheran School | 15.9 |
Regular elementary or secondary | KG-8 | 29 | 9.7 | Wisconsin Evangelical Lutheran Synod |
| St Peter Lutheran School | 18.9 |
Regular elementary or secondary | Pre-KG-8 | 42 | 12.3 | Wisconsin Evangelical Lutheran Synod |
| John Ireland School | 19.7 |
Regular elementary or secondary | KG-6 | 90 | 11.2 | Roman Catholic |
| Holy Redeemer Elem School | 22.9 |
Regular elementary or secondary | Pre-KG-8 | 93 | 10.3 | Roman Catholic |
| Parkside Christian School | 24.1 |
Regular elementary or secondary | KG-8 | 9 | 4.5 | Seventh-Day Adventist |
| St Marys School | 24.1 |
Regular elementary or secondary | Pre-KG-8 | 366 | 15.5 | Roman Catholic |
| St Mary's - Marian | 24.1 |
Regular elementary or secondary | Pre-KG-8 | 366 | 14.9 | Roman Catholic |
| Owatonna Montessori Childrens House | 24.5 |
Montessori | Pre-KG-KG | 7 | 7.0 | Nonsectarian |
| Faribault Lutheran School | 24.5 |
Regular elementary or secondary | KG-8 | 161 | 14.9 | Lutheran Church - Missouri Synod |
| Divine Mercy Catholic School | 24.5 |
Regular elementary or secondary | Pre-KG-6 | 281 | 14.5 | Roman Catholic |
