| St John S Lutheran School | 0.0 |
Regular elementary or secondary | Pre-KG-8 | 117 | 16.7 | Lutheran Church - Missouri Synod |
| Emanuel Lutheran School | 5.0 |
Regular elementary or secondary | Pre-KG-8 | 77 | 12.0 | Lutheran Church - Missouri Synod |
| Zion Lutheran School | 5.3 |
Regular elementary or secondary | Pre-KG-8 | 66 | 12.2 | Lutheran Church - Missouri Synod |
| St Bernard Elementary School | 6.7 |
Regular elementary or secondary | Pre-KG-6 | 48 | 8.6 | Roman Catholic |
| Zion Lutheran School | 7.2 |
Regular elementary or secondary | Pre-KG-8 | 57 | 9.5 | Lutheran Church - Missouri Synod |
| St Mark Lutheran School | 7.4 |
Regular elementary or secondary | Pre-KG-8 | 30 | 9.7 | Lutheran Church - Missouri Synod |
| St Josephs School | 7.8 |
Regular elementary or secondary | Pre-KG-8 | 317 | 13.8 | Roman Catholic |
| Trinity Lutheran School | 8.1 |
Regular elementary or secondary | Pre-KG-8 | 271 | 16.6 | Lutheran Church - Missouri Synod |
| St Pius X Catholic School | 11.5 |
Regular elementary or secondary | Pre-KG-6 | 77 | 12.8 | Roman Catholic |
| First Lutheran School | 11.5 |
Regular elementary or secondary | 1-8 | 140 | 14.0 | Lutheran Church - Missouri Synod |
| Christ Community Lutheran School | 12.4 |
Regular elementary or secondary | Pre-KG-8 | 105 | 13.8 | Lutheran Church - Missouri Synod |
| Our Lady Of The Prairie School | 13.2 |
Regular elementary or secondary | Pre-KG-6 | 50 | 10.0 | Roman Catholic |
| Trinity Lutheran School | 13.3 |
Regular elementary or secondary | Pre-KG-8 | 56 | 11.2 | Wisconsin Evangelical Lutheran Synod |
| St Paul Lutheran School | 14.8 |
Regular elementary or secondary | Pre-KG-8 | 51 | 12.8 | Wisconsin Evangelical Lutheran Synod |
| Step By Step Montessori | 15.4 |
Montessori | KG-KG | 24 | 24.0 | Nonsectarian |
| Jonathan Montessori School | 15.4 |
Montessori | Pre-KG-KG | 18 | 6.0 | Nonsectarian |
| Guardian Angels Elem School | 15.4 |
Regular elementary or secondary | Pre-KG-8 | 216 | 12.7 | Roman Catholic |
| St John's Lutheran School | 15.6 |
Regular elementary or secondary | Pre-KG-8 | 235 | 13.2 | Lutheran Church - Missouri Synod |
| Our Lady Of The Lake School | 16.1 |
Regular elementary or secondary | KG-8 | 171 | 11.7 | Roman Catholic |
| St John The Baptist | 16.3 |
Regular elementary or secondary | Pre-KG-6 | 123 | 12.9 | Roman Catholic |
| Holy Family Catholic School | 16.3 |
Regular elementary or secondary | Pre-KG-6 | 87 | 14.5 | Roman Catholic |
| Calvary Memorial Christian School | 17.8 |
Regular elementary or secondary | Pre-KG-8 | 71 | 8.4 | Christian (no specific denomination) |
| Children Of Tomorrow | 18.1 |
Early childhood program/child care center | Pre-KG-KG | 6 | 6.0 | Nonsectarian |
| Our Savior Lutheran School | 18.2 |
Regular elementary or secondary | KG-8 | 148 | 9.9 | Lutheran Church - Missouri Synod |
| St Peter S School | 18.6 |
Regular elementary or secondary | Pre-KG-6 | 86 | 11.6 | Roman Catholic |
| Spring Hill School | 19.0 |
Special program emphasis | Pre-KG-8 | 98 | 6.7 | Nonsectarian |
| Mt Olive Lutheran School | 19.0 |
Regular elementary or secondary | Pre-KG-8 | 62 | 12.2 | Wisconsin Evangelical Lutheran Synod |
| St John The Baptist School | 19.1 |
Regular elementary or secondary | Pre-KG-8 | 144 | 13.2 | Roman Catholic |
| St Hubert Elementary School | 19.4 |
Regular elementary or secondary | KG-8 | 690 | 18.6 | Roman Catholic |
| Chapel Hill Academy | 19.7 |
Regular elementary or secondary | KG-8 | 363 | 16.6 | Christian (no specific denomination) |
| St James Lutheran School | 20.7 |
Regular elementary or secondary | Pre-KG-8 | 145 | 16.3 | Lutheran Church - Missouri Synod |
| Shakopee Area Catholic School | 21.1 |
Regular elementary or secondary | Pre-KG-8 | 741 | 17.2 | Roman Catholic |
| Immanuel Lutheran School | 21.9 |
Regular elementary or secondary | Pre-KG-8 | 38 | 7.9 | Lutheran Church - Missouri Synod |
| St Anne Elementary School | 22.1 |
Regular elementary or secondary | KG-6 | 65 | 8.6 | Roman Catholic |
| Grace Lutheran Christian School | 22.5 |
Regular elementary or secondary | KG-6 | 13 | 5.4 | Christian (no specific denomination) |
| St Therese School | 22.5 |
Regular elementary or secondary | Pre-KG-8 | 268 | 13.3 | Roman Catholic |
| Redeemer Lutheran School | 23.2 |
Regular elementary or secondary | Pre-KG-8 | 135 | 13.0 | Lutheran Church - Missouri Synod |
| Academy Of Sts Peter And Paul | 23.2 |
Regular elementary or secondary | Pre-KG-8 | 83 | 8.0 | Roman Catholic |
| St Wenceslaus School | 23.6 |
Regular elementary or secondary | Pre-KG-8 | 321 | 16.4 | Roman Catholic |
| St Bartholomew Catholic School | 23.7 |
Regular elementary or secondary | Pre-KG-6 | 200 | 12.9 | Roman Catholic |
| Northwoods Sda Elementary | 23.9 |
Regular elementary or secondary | KG-8 | 23 | 11.5 | Seventh-Day Adventist |
| St Anastasia Elementary School | 24.2 |
Regular elementary or secondary | Pre-KG-6 | 133 | 14.8 | Roman Catholic |
| St Michael School | 24.3 |
Regular elementary or secondary | Pre-KG-8 | 486 | 17.4 | Roman Catholic |
| Eden Prairie Montessori Learning Center | 24.7 |
Montessori | Pre-KG-KG | 5 | 2.5 | Nonsectarian |
| Holy Name Of Jesus School | 24.9 |
Regular elementary or secondary | KG-6 | 343 | 14.6 | Roman Catholic |
| Living Hope Lutheran School | 25.0 |
Regular elementary or secondary | Pre-KG-4 | 94 | 20.4 | Wisconsin Evangelical Lutheran Synod |
