| Faribault Lutheran School | 10.0 |
Regular elementary or secondary | KG-8 | 161 | 14.9 | Lutheran Church - Missouri Synod |
| Divine Mercy Catholic School | 10.1 |
Regular elementary or secondary | Pre-KG-6 | 281 | 14.5 | Roman Catholic |
| Parkside Christian School | 10.2 |
Regular elementary or secondary | KG-8 | 9 | 4.5 | Seventh-Day Adventist |
| Holy Redeemer Elem School | 12.4 |
Regular elementary or secondary | Pre-KG-8 | 93 | 10.3 | Roman Catholic |
| Sacred Heart School | 13.8 |
Regular elementary or secondary | Pre-KG-4 | 158 | 15.3 | Roman Catholic |
| Trinity Lutheran School | 15.7 |
Regular elementary or secondary | Pre-KG-8 | 111 | 13.2 | Lutheran Church - Missouri Synod |
| All Saints Catholic School | 17.4 |
Regular elementary or secondary | Pre-KG-4 | 18 | 6.0 | Roman Catholic |
| Holy Cross Catholic School | 18.4 |
Regular elementary or secondary | Pre-KG-8 | 155 | 13.0 | Roman Catholic |
| St Marys School | 18.5 |
Regular elementary or secondary | Pre-KG-8 | 366 | 15.5 | Roman Catholic |
| St Mary's - Marian | 18.5 |
Regular elementary or secondary | Pre-KG-8 | 366 | 14.9 | Roman Catholic |
| St Wenceslaus School | 19.2 |
Regular elementary or secondary | Pre-KG-8 | 321 | 16.4 | Roman Catholic |
| Owatonna Montessori Childrens House | 19.2 |
Montessori | Pre-KG-KG | 7 | 7.0 | Nonsectarian |
| St Dominic Elementary School | 20.0 |
Regular elementary or secondary | Pre-KG-8 | 159 | 13.4 | Roman Catholic |
| Northfield Montessori | 20.8 |
Montessori | Pre-KG-KG | 20 | 20.0 | Nonsectarian |
| St Peter Lutheran School | 24.3 |
Regular elementary or secondary | Pre-KG-8 | 42 | 12.3 | Wisconsin Evangelical Lutheran Synod |
