| St Johns Ev Lutheran School | 9.5 |
Regular elementary or secondary | Pre-KG-8 | 38 | 7.9 | Wisconsin Evangelical Lutheran Synod |
| Greene Valley School | 17.5 |
Regular elementary or secondary | KG-8 | 23 | 12.1 | Seventh-Day Adventist |
| Resurrection Lutheran School | 17.6 |
Regular elementary or secondary | KG-8 | 119 | 18.9 | Wisconsin Evangelical Lutheran Synod |
| Rochester Montessori School | 18.8 |
Montessori | Pre-KG-6 | 62 | 5.7 | Nonsectarian |
| Rochester Central Lutheran School | 19.1 |
Regular elementary or secondary | Pre-KG-8 | 276 | 12.7 | Lutheran Church - Missouri Synod |
| St Paul's Lutheran Elementary School | 19.5 |
Regular elementary or secondary | Pre-KG-8 | 34 | 9.4 | Wisconsin Evangelical Lutheran Synod |
| St Joseph Catholic School | 19.6 |
Regular elementary or secondary | Pre-KG-5 | 81 | 11.6 | Roman Catholic |
| Concordia-immanuel Lutheran School | 19.7 |
Regular elementary or secondary | KG-5 | 40 | 13.3 | Lutheran Church - Missouri Synod |
| St Johns Lutheran School | 19.8 |
Regular elementary or secondary | KG-8 | 47 | 12.1 | Wisconsin Evangelical Lutheran Synod |
| St Pius X School | 20.1 |
Regular elementary or secondary | KG-4 | 231 | 17.0 | Roman Catholic |
| Grace Lutheran School | 20.4 |
Regular elementary or secondary | Pre-KG-4 | 16 | 5.3 | Lutheran Church - Missouri Synod |
| Maranatha Adventist School | 20.4 |
Regular elementary or secondary | 4-8 | 13 | 6.5 | Seventh-Day Adventist |
| St Francis Of Assisi Elementary School | 21.7 |
Regular elementary or secondary | Pre-KG-8 | 407 | 18.2 | Roman Catholic |
| St Johns Lutheran School | 22.2 |
Regular elementary or secondary | Pre-KG-8 | 56 | 9.5 | Wisconsin Evangelical Lutheran Synod |
