| Greene Valley School | 0.0 |
Regular elementary or secondary | KG-8 | 23 | 12.1 | Seventh-Day Adventist |
| Resurrection Lutheran School | 3.8 |
Regular elementary or secondary | KG-8 | 119 | 18.9 | Wisconsin Evangelical Lutheran Synod |
| Rochester Central Lutheran School | 4.2 |
Regular elementary or secondary | Pre-KG-8 | 276 | 12.7 | Lutheran Church - Missouri Synod |
| St Pius X School | 5.3 |
Regular elementary or secondary | KG-4 | 231 | 17.0 | Roman Catholic |
| St Francis Of Assisi Elementary School | 5.8 |
Regular elementary or secondary | Pre-KG-8 | 407 | 18.2 | Roman Catholic |
| Rochester Montessori School | 7.3 |
Montessori | Pre-KG-6 | 62 | 5.7 | Nonsectarian |
| Holy Spirit School | 11.4 |
Regular elementary or secondary | KG-8 | 328 | 15.7 | Roman Catholic |
| Immanuel Lutheran School | 13.8 |
Regular elementary or secondary | Pre-KG-8 | 46 | 7.7 | Lutheran Church - Missouri Synod |
| Christ Lutheran School | 17.5 |
Regular elementary or secondary | KG-8 | 50 | 12.8 | Wisconsin Evangelical Lutheran Synod |
| Grace Lutheran School | 21.7 |
Regular elementary or secondary | Pre-KG-4 | 16 | 5.3 | Lutheran Church - Missouri Synod |
| Maranatha Adventist School | 22.3 |
Regular elementary or secondary | 4-8 | 13 | 6.5 | Seventh-Day Adventist |
| St Johns Ev Lutheran School | 23.1 |
Regular elementary or secondary | Pre-KG-8 | 38 | 7.9 | Wisconsin Evangelical Lutheran Synod |
