| Cranberry Marsh School | 5.4 |
Regular elementary or secondary | 1-8 | 20 | 20.0 | Amish |
| Diamond Crossing School | 6.7 |
Regular elementary or secondary | 1-8 | 30 | 30.0 | Amish |
| Children's Hours School | 6.8 |
Alternative/other | Pre-KG-1 | 7 | 2.1 | Nonsectarian |
| St Francis De Sales-st Stephen | 6.9 |
Regular elementary or secondary | Pre-KG-8 | 158 | 13.6 | Roman Catholic |
| Kashong School | 9.6 |
Regular elementary or secondary | 1-8 | 33 | 16.5 | Mennonite |
| Grove Creek School | 9.8 |
Regular elementary or secondary | 2-8 | 19 | 19.0 | Amish |
| Frontenac Sda Elementary School | 10.0 |
Regular elementary or secondary | 2-8 | 11 | 10.0 | Seventh-Day Adventist |
| Peachtown Elementary School | 10.1 |
Regular elementary or secondary | Pre-KG-7 | 30 | 6.2 | Nonsectarian |
| Townline School | 10.4 |
Regular elementary or secondary | 1-8 | 28 | 14.0 | Mennonite |
| West Wood Mennonite School | 12.4 |
Regular elementary or secondary | 1-8 | 28 | 14.0 | Mennonite |
| Sunny Haven Mennonite School | 12.9 |
Regular elementary or secondary | 1-7 | 14 | 14.0 | Mennonite |
| New Conquest Mennonite School | 13.3 |
Regular elementary or secondary | 1-8 | 27 | 13.5 | Mennonite |
| Benton Mennonite School | 13.5 |
Regular elementary or secondary | 1-8 | 32 | 16.0 | Mennonite |
| Clyde Mennonite Parochial School | 14.4 |
Regular elementary or secondary | 1-8 | 36 | 12.4 | Mennonite |
| St Michaels Elementary School | 14.7 |
Regular elementary or secondary | Pre-KG-5 | 68 | 10.3 | Roman Catholic |
| Valley View School | 15.8 |
Regular elementary or secondary | 1-8 | 21 | 11.1 | Mennonite |
| Chubb Hollow Mennonite School | 16.0 |
Regular elementary or secondary | 1-8 | 28 | 14.0 | Mennonite |
| Ss Peter & Paul Ukrainian Catholic School | 16.8 |
Regular elementary or secondary | KG-8 | 102 | 10.4 | Roman Catholic |
| Montessori School Of The Finger Lakes | 16.8 |
Montessori | Pre-KG-5 | 18 | 2.5 | Christian (no specific denomination) |
| Pine Grove Mennonite School | 17.3 |
Regular elementary or secondary | 1-8 | 15 | 15.0 | Mennonite |
| St Joseph School | 17.6 |
Regular elementary or secondary | 1-8 | 163 | 11.8 | Roman Catholic |
| Spring Hill Mennonite School | 18.1 |
Regular elementary or secondary | 1-8 | 30 | 15.0 | Mennonite |
| Wood Corner Mennonite School | 18.3 |
Regular elementary or secondary | 1-8 | 21 | 10.5 | Mennonite |
| Walnut View Mennonite School | 19.2 |
Regular elementary or secondary | 1-8 | 31 | 15.5 | Nonsectarian |
| St Michael Elementary School | 19.2 |
Regular elementary or secondary | Pre-KG-8 | 118 | 10.2 | Roman Catholic |
| Sunny View Mennonite School | 19.4 |
Regular elementary or secondary | 1-8 | 20 | 10.0 | Mennonite |
| Meadow Lane School | 20.0 |
Regular elementary or secondary | 1-8 | 20 | 12.5 | Mennonite |
| Canandaigua Montessori School | 21.4 |
Montessori | Pre-KG-KG | 7 | 3.5 | Nonsectarian |
| St Mary School | 21.6 |
Regular elementary or secondary | Pre-KG-8 | 168 | 10.5 | Roman Catholic |
| Scenic Valley Mennonite School | 22.5 |
Regular elementary or secondary | 1-8 | 18 | 18.0 | Mennonite |
| East Palmyra Christian School | 23.1 |
Regular elementary or secondary | Pre-KG-8 | 60 | 8.8 | Christian (no specific denomination) |
| Conquest Parochial School | 23.1 |
Regular elementary or secondary | 1-8 | 38 | 14.6 | Mennonite |
