| Cobblestone School | 1.4 |
Alternative/other | Pre-KG-Pre-KG | 81 | 5.7 | Nonsectarian |
| Allendale Columbia School | 2.4 |
Regular elementary or secondary | Pre-KG-12 | 413 | 7.0 | Nonsectarian |
| Rochester Seventh-day Adventist Junior Academy | 2.7 |
Regular elementary or secondary | KG-12 | 62 | 6.2 | Seventh-Day Adventist |
| Bread Of Life Christian Academy | 3.9 |
Regular elementary or secondary | KG-10 | 96 | 7.7 | Christian (no specific denomination) |
| The Norman Howard School | 4.1 |
Special education | 4-12 | 140 | 3.7 | Nonsectarian |
| School Of The Holy Childhood | 4.3 |
Special education | Ungraded-Ungraded | 109 | 5.7 | Nonsectarian |
| Archangel School | 4.3 |
Regular elementary or secondary | KG-12 | 65 | 5.7 | Roman Catholic |
| Trinity Montessori School | 4.8 |
Montessori | Ungraded-Ungraded | 202 | 25.2 | Nonsectarian |
| Charles Finney School | 5.2 |
Regular elementary or secondary | KG-12 | 273 | 6.8 | Christian (no specific denomination) |
| Hope Hall School | 6.0 |
Regular elementary or secondary | 3-9 | 102 | 7.1 | Nonsectarian |
| Northstar Christian Academy | 6.5 |
Regular elementary or secondary | KG-12 | 290 | 10.7 | Baptist |
| Hillside Childrens Center Halpern Ed Center | 7.1 |
Special education | 3-12 | 69 | 3.8 | Nonsectarian |
| Southeast Christian Academy | 7.2 |
Regular elementary or secondary | Pre-KG-12 | 56 | 5.7 | Baptist |
| Crestwood Childrens Center | 7.7 |
Special education | Pre-KG-12 | 173 | 4.8 | Nonsectarian |
| Webster Christian School | 9.2 |
Regular elementary or secondary | Pre-KG-12 | 231 | 10.4 | Christian (no specific denomination) |
| Lima Christian School | 15.4 |
Regular elementary or secondary | KG-12 | 215 | 7.3 | Baptist |
| Lake Ontario Baptist Academy | 18.1 |
Regular elementary or secondary | KG-12 | 35 | 7.6 | Baptist |
| Calvary Chapel Christian School | 18.2 |
Regular elementary or secondary | KG-12 | 103 | 8.5 | Christian (no specific denomination) |
| Cornerstone Christian Academy | 19.1 |
Regular elementary or secondary | KG-12 | 69 | 12.8 | Christian (no specific denomination) |
