| York Sda Church School | 0.9 |
Regular elementary or secondary | Pre-KG-9 | 38 | 9.7 | Seventh-Day Adventist |
| Tidings Of Peace Christian School | 3.5 |
Regular elementary or secondary | KG-12 | 34 | 5.6 | Mennonite |
| Bethel Christian Academy | 3.8 |
Regular elementary or secondary | KG-12 | 21 | 6.8 | Christian (no specific denomination) |
| Bible Baptist Christian School | 3.9 |
Regular elementary or secondary | Pre-KG-12 | 121 | 8.6 | Baptist |
| York Country Day School | 4.0 |
Regular elementary or secondary | Pre-KG-12 | 168 | 6.0 | Nonsectarian |
| Montessori Childrens House | 6.0 |
Montessori | Ungraded-Ungraded | 85 | 12.1 | Nonsectarian |
| Faith And Truth Assembly | 8.7 |
Regular elementary or secondary | Pre-KG-10 | 9 | 4.5 | Christian (no specific denomination) |
| Pleasant Hill Christian School | 11.0 |
Regular elementary or secondary | 1-12 | 47 | 11.8 | Brethren |
| Kralltown Mennonite School | 11.2 |
Alternative/other | 1-9 | 30 | 30.0 | Mennonite |
| Garbers Mennonite School | 11.7 |
Regular elementary or secondary | 1-9 | 45 | 8.8 | Mennonite |
| Red Lion Christian School | 11.8 |
Regular elementary or secondary | Pre-KG-12 | 225 | 15.0 | Christian (no specific denomination) |
| Paradise School For Boys | 12.8 |
Alternative/other | 1-12 | 70 | 8.4 | Roman Catholic |
| Shrewsbury Dunkard Breth School | 13.3 |
Regular elementary or secondary | 1-12 | 6 | 5.5 | Other |
| Mt Calvary Christian School | 14.6 |
Regular elementary or secondary | Pre-KG-12 | 367 | 10.6 | Christian (no specific denomination) |
| Hanover Christian Academy | 16.3 |
Regular elementary or secondary | KG-12 | 39 | 8.7 | Brethren |
| The Janus School | 16.9 |
Special education | 2-12 | 61 | 3.1 | Nonsectarian |
| Sonlight River Brethren School | 17.1 |
Regular elementary or secondary | 1-12 | 38 | 9.5 | Brethren |
| Hanover Mennonite School | 17.2 |
Regular elementary or secondary | 1-9 | 48 | 12.0 | Mennonite |
| New Freedom Christian School | 18.2 |
Regular elementary or secondary | KG-12 | 32 | 5.9 | Baptist |
| Hershey Christian School | 18.4 |
Regular elementary or secondary | KG-12 | 280 | 11.1 | Christian (no specific denomination) |
| Bible Baptist School | 18.7 |
Regular elementary or secondary | Pre-KG-12 | 441 | 13.0 | Baptist |
| Missionary Bible Baptist Academy | 19.0 |
Regular elementary or secondary | 1-11 | 13 | 3.9 | Baptist |
| Emmanuel Baptist Christian Academy | 19.1 |
Regular elementary or secondary | KG-12 | 127 | 7.9 | Baptist |
| Harrisburg Academy | 19.4 |
Regular elementary or secondary | Pre-KG-12 | 403 | 9.8 | Nonsectarian |
| Blue Rock Mennonite School | 19.4 |
Regular elementary or secondary | 1-10 | 52 | 10.4 | Mennonite |
| Hillside Amish School | 19.4 |
Regular elementary or secondary | 1-9 | 19 | 19.0 | Amish |
| Wordsworth Academy | 20.5 |
Special education | 2-12 | 47 | 7.8 | Nonsectarian |
| Milton Hershey School | 20.7 |
Regular elementary or secondary | Pre-KG-12 | 1695 | 8.8 | Nonsectarian |
| Covenant Christian Academy | 20.7 |
Regular elementary or secondary | KG-12 | 198 | 11.1 | Christian (no specific denomination) |
| Freedom Christian School | 21.5 |
Regular elementary or secondary | Pre-KG-12 | 103 | 11.7 | Assembly of God |
| Sporting Hill Mennonite School | 21.9 |
Regular elementary or secondary | 1-10 | 57 | 11.4 | Mennonite |
| Faith Tabernacle School | 22.2 |
Regular elementary or secondary | 1-12 | 152 | 10.4 | Christian (no specific denomination) |
| Lancaster Country Day School | 23.7 |
Special program emphasis | Pre-KG-12 | 472 | 7.9 | Nonsectarian |
| Yellow Breeches Education Center | 24.6 |
Special education | 6-12 | 88 | 6.3 | Nonsectarian |
| Harrisburg Christian School | 24.9 |
Regular elementary or secondary | KG-12 | 282 | 11.6 | Christian (no specific denomination) |
