| Lutheran High School | 1.3 |
Regular elementary or secondary | 9-12 | 229 | 10.7 | Lutheran Church - Missouri Synod |
| Shoreland Lutheran High School | 8.6 |
Regular elementary or secondary | 9-12 | 324 | 14.3 | Wisconsin Evangelical Lutheran Synod |
| Country View Christian Academy | 9.7 |
Regular elementary or secondary | 8-12 | 11 | 3.3 | Christian (no specific denomination) |
| St Joseph Interparish Jr High School | 10.5 |
Regular elementary or secondary | 7-8 | 158 | 15.6 | Roman Catholic |
| St Joseph High School | 10.5 |
Regular elementary or secondary | 9-12 | 290 | 13.3 | Roman Catholic |
| The Eugene Quality Academy | 13.7 |
Alternative/other | 11-11 | 2 | 2.0 | Nonsectarian |
| St Thomas More High School | 18.7 |
Regular elementary or secondary | 9-12 | 432 | 15.3 | Roman Catholic |
| Martin Luther High School | 19.6 |
Regular elementary or secondary | 9-12 | 360 | 15.7 | Lutheran Church - Missouri Synod |
| Institute For Career Empowerment | 23.1 |
Regular elementary or secondary | 8-12 | 150 | 27.8 | Christian (no specific denomination) |
| St Joan Antida High School | 23.5 |
Regular elementary or secondary | 9-12 | 362 | 13.5 | Roman Catholic |
| Marquette University High School | 23.8 |
Regular elementary or secondary | 9-12 | 1052 | 17.0 | Roman Catholic |
| Shalom High School | 24.3 |
Alternative/other | 9-12 | 105 | 10.5 | Nonsectarian |
| Pius Xi High School | 24.4 |
Regular elementary or secondary | 9-12 | 1215 | 14.0 | Roman Catholic |
| Wisconsin Lutheran High School | 24.8 |
Regular elementary or secondary | 9-12 | 862 | 11.5 | Wisconsin Evangelical Lutheran Synod |
