| First German Evangelical Lutheran School | 0.0 |
Regular elementary or secondary | Pre-KG-8 | 81 | 12.5 | Wisconsin Evangelical Lutheran Synod |
| St Frances Cabrini Middle School | 0.9 |
Regular elementary or secondary | 6-8 | 181 | 14.6 | Roman Catholic |
| St Francis Xavier School | 0.9 |
Regular elementary or secondary | Pre-KG-5 | 134 | 12.8 | Roman Catholic |
| Immanuel Lutheran School | 1.3 |
Regular elementary or secondary | Pre-KG-8 | 85 | 12.5 | Wisconsin Evangelical Lutheran Synod |
| St Francis De Sales Elem School | 1.4 |
Regular elementary or secondary | KG-5 | 202 | 12.7 | Roman Catholic |
| Bethany Ev Lutheran School | 1.6 |
Regular elementary or secondary | KG-8 | 116 | 12.1 | Wisconsin Evangelical Lutheran Synod |
| Ashling Montessori School Inc | 2.6 |
Montessori | Pre-KG-KG | 7 | 2.5 | Nonsectarian |
| Children's House Of Manitowoc | 3.7 |
Montessori | Pre-KG-KG | 1 | 1.0 | Nonsectarian |
| St Johns Lutheran School | 5.6 |
Regular elementary or secondary | 1-8 | 107 | 16.2 | Wisconsin Evangelical Lutheran Synod |
| St John's Lutheran School | 6.7 |
Regular elementary or secondary | KG-8 | 71 | 11.6 | Lutheran Church - Missouri Synod |
| St Peter The Fisherman Catholic School | 7.0 |
Regular elementary or secondary | Pre-KG-8 | 174 | 11.7 | Roman Catholic |
| St Mary's & St Michael's Elementary School | 10.2 |
Regular elementary or secondary | Pre-KG-8 | 62 | 9.7 | Roman Catholic |
| St Mary/st Michael School | 10.2 |
Regular elementary or secondary | Pre-KG-8 | 62 | 10.2 | Roman Catholic |
| St Peters Lutheran School | 10.6 |
Regular elementary or secondary | Pre-KG-8 | 36 | 10.9 | Wisconsin Evangelical Lutheran Synod |
| St Gregory School | 14.5 |
Regular elementary or secondary | Pre-KG-8 | 68 | 8.1 | Roman Catholic |
| St John Lutheran School | 14.7 |
Regular elementary or secondary | Pre-KG-8 | 44 | 11.6 | Wisconsin Evangelical Lutheran Synod |
| St John-st James Lutheran School | 15.1 |
Regular elementary or secondary | Pre-KG-8 | 40 | 9.1 | Wisconsin Evangelical Lutheran Synod |
| Zion Lutheran School Of Wayside | 18.3 |
Regular elementary or secondary | Pre-KG-8 | 125 | 13.7 | Lutheran Church - Missouri Synod |
| All Saints School | 20.0 |
Regular elementary or secondary | Pre-KG-8 | 84 | 12.3 | Roman Catholic |
| St Pauls Lutheran School | 20.2 |
Regular elementary or secondary | Pre-KG-8 | 65 | 13.5 | Wisconsin Evangelical Lutheran Synod |
| Trinity Evang Lutheran School | 20.7 |
Regular elementary or secondary | Pre-KG-8 | 108 | 15.4 | Lutheran Church - Missouri Synod |
| Trinity Lutheran School | 21.0 |
Regular elementary or secondary | Pre-KG-8 | 59 | 9.8 | Wisconsin Evangelical Lutheran Synod |
| Holy Family School | 21.2 |
Regular elementary or secondary | Pre-KG-8 | 75 | 6.9 | Roman Catholic |
| Morrison Zion Lutheran School | 21.3 |
Regular elementary or secondary | Pre-KG-8 | 88 | 17.6 | Wisconsin Evangelical Lutheran Synod |
| Trinity Lutheran School | 21.7 |
Regular elementary or secondary | Pre-KG-8 | 38 | 8.8 | Lutheran Church - Missouri Synod |
| Sheboygan Christian School | 22.3 |
Regular elementary or secondary | Pre-KG-8 | 168 | 16.0 | Christian (no specific denomination) |
| Divine Savior Catholic School | 22.4 |
Regular elementary or secondary | Pre-KG-4 | 73 | 11.2 | Roman Catholic |
| St Dominic Elementary School | 22.5 |
Regular elementary or secondary | KG-8 | 136 | 12.6 | Roman Catholic |
| Montessori Childrens House | 22.6 |
Montessori | Pre-KG-KG | 3 | 3.0 | Nonsectarian |
| St Paul Lutheran School | 22.7 |
Regular elementary or secondary | Pre-KG-8 | 67 | 8.5 | Lutheran Church - Missouri Synod |
| Holy Family School | 22.8 |
Regular elementary or secondary | Pre-KG-8 | 166 | 12.4 | Roman Catholic |
| Trinity Lutheran School | 23.4 |
Regular elementary or secondary | Pre-KG-8 | 137 | 12.9 | Lutheran Church - Missouri Synod |
| Immanuel Evangelical Lutheran School Of Shirley | 23.7 |
Regular elementary or secondary | KG-7 | 13 | 5.2 | Other Lutheran |
| Divine Savior Catholic School | 23.8 |
Regular elementary or secondary | 5-8 | 64 | 13.9 | Roman Catholic |
| Immanuel Lutheran School | 24.0 |
Regular elementary or secondary | Pre-KG-8 | 42 | 8.8 | Lutheran Church - Missouri Synod |
| Bethlehem Lutheran School | 24.3 |
Regular elementary or secondary | Pre-KG-8 | 156 | 15.0 | Lutheran Church - Missouri Synod |
