| Notre Dame High School | 3.2 |
Regular elementary or secondary | 9-12 | 634 | 16.1 | Roman Catholic |
| Bellarmine College Prep School | 4.2 |
Regular elementary or secondary | 9-12 | 1575 | 18.9 | Roman Catholic |
| The Harker School | 4.7 |
Regular elementary or secondary | 9-12 | 666 | 8.3 | Nonsectarian |
| Archbishop Mitty High School | 5.5 |
Regular elementary or secondary | 9-12 | 1657 | 17.9 | Roman Catholic |
| Starlight High | 7.4 |
Special education | 8-12 | 30 | 7.5 | Nonsectarian |
| St Lawrence Academy | 7.4 |
Regular elementary or secondary | 9-12 | 314 | 13.0 | Roman Catholic |
| St Francis High School | 11.9 |
Regular elementary or secondary | 9-12 | 1622 | 17.2 | Roman Catholic |
| Mountain View Academy | 12.7 |
Regular elementary or secondary | 9-12 | 158 | 15.2 | Seventh-Day Adventist |
| School For Independent Learners | 14.2 |
Alternative/other | 9-12 | 125 | 4.0 | Nonsectarian |
| Palo Alto Prep | 14.8 |
Regular elementary or secondary | 9-12 | 60 | 8.6 | Nonsectarian |
| Kehillah Jewish High School | 14.9 |
Regular elementary or secondary | 9-12 | 108 | 6.5 | Jewish |
| Beach High School | 15.9 |
Alternative/other | 9-12 | 29 | 290.0 | Nonsectarian |
| Alsion Middle/high School | 17.3 |
Montessori | 7-12 | 53 | 11.0 | Nonsectarian |
| Merit Academy | 18.7 |
Regular elementary or secondary | 9-12 | 24 | 4.3 | Nonsectarian |
| Mid-peninsula High School | 19.3 |
Regular elementary or secondary | 9-12 | 121 | 7.8 | Nonsectarian |
| Sacred Heart Preparatory | 19.8 |
Regular elementary or secondary | 9-12 | 527 | 7.6 | Roman Catholic |
| Empire Academy | 22.4 |
Regular elementary or secondary | 7-12 | 37 | 4.2 | Nonsectarian |
| Santa Cruz Waldorf High School | 23.7 |
Special program emphasis | 9-12 | 52 | 5.7 | Nonsectarian |
