| Paradise School For Boys | 0.0 |
Alternative/other | 1-12 | 70 | 8.4 | Roman Catholic |
| Pleasant Hill Christian School | 3.1 |
Regular elementary or secondary | 1-12 | 47 | 11.8 | Brethren |
| Faith And Truth Assembly | 4.2 |
Regular elementary or secondary | Pre-KG-10 | 9 | 4.5 | Christian (no specific denomination) |
| Garbers Mennonite School | 4.9 |
Regular elementary or secondary | 1-9 | 45 | 8.8 | Mennonite |
| Hanover Christian Academy | 5.4 |
Regular elementary or secondary | KG-12 | 39 | 8.7 | Brethren |
| Hanover Mennonite School | 5.6 |
Regular elementary or secondary | 1-9 | 48 | 12.0 | Mennonite |
| Kralltown Mennonite School | 6.9 |
Alternative/other | 1-9 | 30 | 30.0 | Mennonite |
| Missionary Bible Baptist Academy | 8.5 |
Regular elementary or secondary | 1-11 | 13 | 3.9 | Baptist |
| Freedom Christian School | 8.9 |
Regular elementary or secondary | Pre-KG-12 | 103 | 11.7 | Assembly of God |
| York Sda Church School | 11.9 |
Regular elementary or secondary | Pre-KG-9 | 38 | 9.7 | Seventh-Day Adventist |
| York Country Day School | 12.6 |
Regular elementary or secondary | Pre-KG-12 | 168 | 6.0 | Nonsectarian |
| Christian School Of York | 12.8 |
Regular elementary or secondary | Pre-KG-12 | 337 | 9.3 | Christian (no specific denomination) |
| Littlestown Christian Academy | 12.9 |
Regular elementary or secondary | Pre-KG-9 | 89 | 8.2 | Assembly of God |
| Tidings Of Peace Christian School | 14.2 |
Regular elementary or secondary | KG-12 | 34 | 5.6 | Mennonite |
| Adams County Christian Academy | 14.4 |
Regular elementary or secondary | Pre-KG-12 | 136 | 7.7 | Baptist |
| Bible Baptist Christian School | 15.3 |
Regular elementary or secondary | Pre-KG-12 | 121 | 8.6 | Baptist |
| Bethel Christian Academy | 15.7 |
Regular elementary or secondary | KG-12 | 21 | 6.8 | Christian (no specific denomination) |
| Shrewsbury Dunkard Breth School | 17.0 |
Regular elementary or secondary | 1-12 | 6 | 5.5 | Other |
| Montessori Childrens House | 17.7 |
Montessori | Ungraded-Ungraded | 85 | 12.1 | Nonsectarian |
| New Freedom Christian School | 18.6 |
Regular elementary or secondary | KG-12 | 32 | 5.9 | Baptist |
| Red Lion Christian School | 20.1 |
Regular elementary or secondary | Pre-KG-12 | 225 | 15.0 | Christian (no specific denomination) |
| Yellow Breeches Education Center | 22.1 |
Special education | 6-12 | 88 | 6.3 | Nonsectarian |
| Bethel Christian Academy | 22.5 |
Regular elementary or secondary | KG-12 | 135 | 7.9 | Christian (no specific denomination) |
| Bible Baptist School | 22.5 |
Regular elementary or secondary | Pre-KG-12 | 441 | 13.0 | Baptist |
| Emmanuel Baptist Christian Academy | 23.1 |
Regular elementary or secondary | KG-12 | 127 | 7.9 | Baptist |
| Harrisburg Academy | 24.8 |
Regular elementary or secondary | Pre-KG-12 | 403 | 9.8 | Nonsectarian |
