| Stuart Hall | 0.3 |
Regular elementary or secondary | KG-12 | 314 | 9.3 | Episcopal |
| Midway Bible Baptist Church School | 6.4 |
Regular elementary or secondary | Pre-KG-12 | 25 | 6.4 | Baptist |
| Pilgrim Christian School | 7.3 |
Regular elementary or secondary | KG-12 | 45 | 8.5 | Mennonite |
| Good Shepherd School | 8.8 |
Regular elementary or secondary | KG-11 | 48 | 10.0 | Christian (no specific denomination) |
| Ridgeview Christian School | 9.8 |
Regular elementary or secondary | Pre-KG-12 | 212 | 13.3 | Baptist |
| Afton Christian School | 16.3 |
Regular elementary or secondary | KG-12 | 40 | 6.2 | Christian (no specific denomination) |
| Hickory Hollow Christian School | 19.1 |
Regular elementary or secondary | 1-12 | 67 | 10.3 | Christian (no specific denomination) |
| Woodland Montessori School | 21.5 |
Montessori | Ungraded-Ungraded | 70 | 24.1 | Nonsectarian |
| Berea Christian School | 21.6 |
Regular elementary or secondary | 1-12 | 132 | 15.3 | Mennonite |
| Good Shepherd School And Day Care-2 | 22.5 |
Regular elementary or secondary | KG-12 | 66 | 11.0 | Christian (no specific denomination) |
| Minnick Education Center - Harrisonburg | 22.6 |
Alternative/other | 2-12 | 36 | 3.3 | Nonsectarian |
| Victory Baptist Christian Academy | 23.6 |
Regular elementary or secondary | 1-12 | 16 | 5.3 | Baptist |
| Calvary Christian Academy | 24.0 |
Regular elementary or secondary | KG-12 | 79 | 9.0 | Mennonite |
| Eastern Mennonite High School | 24.7 |
Regular elementary or secondary | 6-12 | 321 | 10.3 | Mennonite |
