| St Marys School | 19.3 |
Regular elementary or secondary | 1-8 | 41 | 9.5 | Roman Catholic |
| Apple School | 21.1 |
Early childhood program/child care center | Pre-KG-KG | 1 | 0.9 | Nonsectarian |
| Christian Chapel Academy | 21.3 |
Regular elementary or secondary | Pre-KG-8 | 153 | 12.9 | Assembly of God |
| Childrens House Montessori Of Columbia | 21.5 |
Montessori | Pre-KG-1 | 16 | 8.4 | Nonsectarian |
| Islamic School Of Columbia-missouri | 21.8 |
Regular elementary or secondary | Pre-KG-5 | 30 | 4.3 | Islamic |
| St Brendan School | 22.3 |
Regular elementary or secondary | Pre-KG-8 | 144 | 13.1 | Roman Catholic |
| St Peter Interparish Catholic School | 22.4 |
Regular elementary or secondary | KG-KG | 60 | 2.0 | Roman Catholic |
| Immaculate Conception School | 22.7 |
Regular elementary or secondary | KG-8 | 468 | 13.4 | Roman Catholic |
| St Joseph Cathedral School | 22.7 |
Regular elementary or secondary | Pre-KG-8 | 410 | 17.4 | Roman Catholic |
| Moreau Montessori School | 23.2 |
Montessori | Pre-KG-3 | 34 | 8.7 | Nonsectarian |
| Trinity Lutheran School | 23.5 |
Regular elementary or secondary | KG-8 | 319 | 15.1 | Lutheran Church - Missouri Synod |
| Good Shepherd Lutheran School | 23.8 |
Regular elementary or secondary | KG-7 | 94 | 14.2 | Lutheran Church - Missouri Synod |
| St Joseph Elementary School | 23.9 |
Regular elementary or secondary | KG-8 | 64 | 11.6 | Roman Catholic |
| Columbia Catholic School | 23.9 |
Regular elementary or secondary | KG-8 | 611 | 17.3 | Roman Catholic |
