| Christ's Dominion Academy | 0.0 |
Alternative/other | KG-10 | 14 | 2.8 | Christian (no specific denomination) |
| New Bethlehem Mennonite | 10.2 |
Regular elementary or secondary | 1-9 | 26 | 8.7 | Mennonite |
| New Bethlehem Wesleyan Methodist School | 10.9 |
Regular elementary or secondary | 2-9 | 5 | 5.0 | Methodist |
| Clarion Center School | 11.8 |
Special education | KG-12 | 24 | 12.0 | Nonsectarian |
| Sunny Spot School | 15.8 |
Special education | Ungraded-Ungraded | 5 | 2.4 | Amish |
| Punxsutawney Christian School | 16.6 |
Regular elementary or secondary | Pre-KG-12 | 144 | 9.9 | Christian (no specific denomination) |
| Lone Maple Amish School | 17.1 |
Regular elementary or secondary | 1-9 | 26 | 16.2 | Amish |
| Oak Grove Parochial School | 17.1 |
Regular elementary or secondary | 1-9 | 28 | 28.0 | Amish |
| Highland Park | 17.2 |
Regular elementary or secondary | 1-9 | 16 | 16.0 | Amish |
| Maple Grove Amish School | 18.6 |
Regular elementary or secondary | 1-9 | 24 | 21.8 | Amish |
| Soldier Christian Academy | 18.9 |
Regular elementary or secondary | 1-12 | 40 | 13.3 | Christian (no specific denomination) |
| Valley View School | 19.1 |
Regular elementary or secondary | 1-9 | 29 | 29.0 | Amish |
| Keystone Smiles Alternative Learning Center | 19.7 |
Alternative/other | 5-12 | 31 | 5.2 | Nonsectarian |
| Hickory Hollow Amish School | 20.0 |
Regular elementary or secondary | 1-9 | 22 | 22.0 | Amish |
| Dubois Area Catholic School | 21.1 |
Regular elementary or secondary | Pre-KG-12 | 538 | 12.5 | Roman Catholic |
| Du Bois Christian Schools | 24.0 |
Regular elementary or secondary | Pre-KG-12 | 87 | 11.9 | Baptist |
| Dubois Christian School | 24.0 |
Regular elementary or secondary | Pre-KG-12 | 90 | 7.9 | Baptist |
