| Aswe-t Pati'a Christian Academy | 0.0 |
Alternative/other | KG-12 | 27 | 8.2 | Christian (no specific denomination) |
| Linfield Christian School | 9.5 |
Regular elementary or secondary | KG-12 | 896 | 17.3 | Christian (no specific denomination) |
| New Haven Nps | 14.1 |
Special education | 6-12 | 84 | 10.5 | Nonsectarian |
| Calvin Christian School Of Escondido/preschool | 14.7 |
Regular elementary or secondary | Pre-KG-12 | 479 | 15.4 | Calvinist |
| Escondido Apostolic Christian Academy | 15.3 |
Regular elementary or secondary | KG-12 | 55 | 5.5 | Other |
| Oak Grove Institute | 16.0 |
Special education | 1-12 | 132 | 8.8 | Nonsectarian |
| Calvary Chapel Christian School | 16.1 |
Regular elementary or secondary | KG-12 | 1097 | 16.6 | Christian (no specific denomination) |
| Sierra Madre Academy | 16.1 |
Regular elementary or secondary | KG-12 | 223 | 14.3 | Roman Catholic |
| West Coast Baptist School | 16.5 |
Regular elementary or secondary | Pre-KG-12 | 44 | 13.3 | Baptist |
| Tri-city Christian Schools | 16.5 |
Regular elementary or secondary | Pre-KG-12 | 989 | 14.6 | Baptist |
| Cchat Center | 16.6 |
Special education | Pre-KG-Pre-KG | 3 | 3.0 | Nonsectarian |
| Teri Learning Academy | 18.5 |
Special education | Ungraded-Ungraded | 56 | 11.2 | Nonsectarian |
| Cornerstone Christian School | 20.3 |
Regular elementary or secondary | KG-12 | 296 | 12.1 | Christian (no specific denomination) |
| Faith Baptist Academy | 21.2 |
Regular elementary or secondary | KG-12 | 175 | 16.2 | Baptist |
| On Track Custom Learning Solutions | 21.9 |
Alternative/other | 5-12 | 65 | 16.2 | Nonsectarian |
| Maranatha Christian School | 23.9 |
Regular elementary or secondary | Pre-KG-11 | 504 | 13.7 | Other |
