| Bible Christian Academy | 0.0 |
Regular elementary or secondary | 1-12 | 40 | 3.5 | Jewish |
| Central Valley Christian Academy | 2.1 |
Regular elementary or secondary | KG-12 | 54 | 8.2 | Christian (no specific denomination) |
| Fresno Adventist Academy | 2.6 |
Regular elementary or secondary | KG-12 | 212 | 12.4 | Seventh-Day Adventist |
| Sierra View Christian Academy | 2.9 |
Regular elementary or secondary | 2-9 | 14 | 2.8 | Christian (no specific denomination) |
| Truth Tabernacle Christian School | 2.9 |
Regular elementary or secondary | KG-12 | 88 | 12.1 | Pentecostal |
| Campus Christian Academy | 3.2 |
Regular elementary or secondary | KG-12 | 89 | 3.0 | Nonsectarian |
| Clovis Christian School | 3.6 |
Regular elementary or secondary | Pre-KG-12 | 214 | 14.8 | Christian (no specific denomination) |
| Fresno Christian Schools | 3.9 |
Regular elementary or secondary | KG-12 | 733 | 15.9 | Christian (no specific denomination) |
| Faith Baptist Academy | 5.2 |
Regular elementary or secondary | KG-12 | 59 | 9.4 | Baptist |
| Souls Harbor Christian Academy | 5.3 |
Regular elementary or secondary | 3-12 | 19 | 6.3 | Pentecostal |
| Koinonia Christian School | 7.8 |
Alternative/other | 1-12 | 68 | 1.7 | Christian (no specific denomination) |
| Bethel Christian Academy | 9.5 |
Regular elementary or secondary | KG-12 | 81 | 7.4 | Pentecostal |
| World Harvest Christian Academy | 11.4 |
Regular elementary or secondary | Pre-KG-12 | 19 | 4.3 | Pentecostal |
| Selma Christian Academy | 15.0 |
Regular elementary or secondary | 2-12 | 27 | 6.8 | Baptist |
| Ambassador Academy | 19.7 |
Regular elementary or secondary | 1-10 | 8 | 2.4 | Christian (no specific denomination) |
| Kerman Christian School | 19.7 |
Regular elementary or secondary | Pre-KG-11 | 80 | 7.0 | Christian (no specific denomination) |
| Immanuel Schools | 20.4 |
Regular elementary or secondary | KG-12 | 541 | 18.0 | Mennonite |
| Western Christian Academy | 20.5 |
Regular elementary or secondary | Trans. 1-12 | 61 | 30.5 | Christian (no specific denomination) |
| Madera Christian School | 24.2 |
Regular elementary or secondary | 1-12 | 15 | 5.8 | Assembly of God |
