| Pleasant Hill Christian School | 2.5 |
Regular elementary or secondary | 1-12 | 47 | 11.8 | Brethren |
| Paradise School For Boys | 4.2 |
Alternative/other | 1-12 | 70 | 8.4 | Roman Catholic |
| Garbers Mennonite School | 4.2 |
Regular elementary or secondary | 1-9 | 45 | 8.8 | Mennonite |
| Kralltown Mennonite School | 6.9 |
Alternative/other | 1-9 | 30 | 30.0 | Mennonite |
| York Sda Church School | 7.8 |
Regular elementary or secondary | Pre-KG-9 | 38 | 9.7 | Seventh-Day Adventist |
| Hanover Christian Academy | 7.9 |
Regular elementary or secondary | KG-12 | 39 | 8.7 | Brethren |
| York Country Day School | 8.4 |
Regular elementary or secondary | Pre-KG-12 | 168 | 6.0 | Nonsectarian |
| Hanover Mennonite School | 8.7 |
Regular elementary or secondary | 1-9 | 48 | 12.0 | Mennonite |
| Christian School Of York | 8.7 |
Regular elementary or secondary | Pre-KG-12 | 337 | 9.3 | Christian (no specific denomination) |
| Tidings Of Peace Christian School | 10.0 |
Regular elementary or secondary | KG-12 | 34 | 5.6 | Mennonite |
| Missionary Bible Baptist Academy | 10.9 |
Regular elementary or secondary | 1-11 | 13 | 3.9 | Baptist |
| Bethel Christian Academy | 11.5 |
Regular elementary or secondary | KG-12 | 21 | 6.8 | Christian (no specific denomination) |
| Bible Baptist Christian School | 11.6 |
Regular elementary or secondary | Pre-KG-12 | 121 | 8.6 | Baptist |
| Freedom Christian School | 13.1 |
Regular elementary or secondary | Pre-KG-12 | 103 | 11.7 | Assembly of God |
| Montessori Childrens House | 13.6 |
Montessori | Ungraded-Ungraded | 85 | 12.1 | Nonsectarian |
| Shrewsbury Dunkard Breth School | 14.0 |
Regular elementary or secondary | 1-12 | 6 | 5.5 | Other |
| Red Lion Christian School | 16.3 |
Regular elementary or secondary | Pre-KG-12 | 225 | 15.0 | Christian (no specific denomination) |
| Littlestown Christian Academy | 16.5 |
Regular elementary or secondary | Pre-KG-9 | 89 | 8.2 | Assembly of God |
| New Freedom Christian School | 16.6 |
Regular elementary or secondary | KG-12 | 32 | 5.9 | Baptist |
| Adams County Christian Academy | 18.4 |
Regular elementary or secondary | Pre-KG-12 | 136 | 7.7 | Baptist |
| Bible Baptist School | 21.3 |
Regular elementary or secondary | Pre-KG-12 | 441 | 13.0 | Baptist |
| Emmanuel Baptist Christian Academy | 21.8 |
Regular elementary or secondary | KG-12 | 127 | 7.9 | Baptist |
| Yellow Breeches Education Center | 23.0 |
Special education | 6-12 | 88 | 6.3 | Nonsectarian |
| Mt Calvary Christian School | 23.1 |
Regular elementary or secondary | Pre-KG-12 | 367 | 10.6 | Christian (no specific denomination) |
| Harrisburg Academy | 23.2 |
Regular elementary or secondary | Pre-KG-12 | 403 | 9.8 | Nonsectarian |
| Bethel Christian Academy | 23.6 |
Regular elementary or secondary | KG-12 | 135 | 7.9 | Christian (no specific denomination) |
| Hillside Amish School | 24.3 |
Regular elementary or secondary | 1-9 | 19 | 19.0 | Amish |
| Faith Tabernacle School | 24.8 |
Regular elementary or secondary | 1-12 | 152 | 10.4 | Christian (no specific denomination) |
