| Eagle Military Academy | 0.6 |
Alternative/other | 3-12 | 84 | 15.0 | Christian (no specific denomination) |
| Grace Christian Academy | 3.7 |
Regular elementary or secondary | KG-12 | 142 | 12.9 | Pentecostal |
| Faith Christian School And Daycare | 4.3 |
Regular elementary or secondary | Pre-KG-12 | 271 | 12.4 | Assembly of God |
| The Remnant Christian School | 4.4 |
Regular elementary or secondary | 6-12 | 14 | 14.0 | Christian (no specific denomination) |
| Cathedral Academy | 4.9 |
Regular elementary or secondary | KG-12 | 302 | 16.3 | Christian (no specific denomination) |
| Ridge Christian Academy | 6.0 |
Regular elementary or secondary | Pre-KG-12 | 124 | 8.6 | Baptist |
| Northside Christian School | 6.3 |
Regular elementary or secondary | Pre-KG-12 | 368 | 10.7 | Baptist |
| Pinewood Preparatory School | 6.3 |
Regular elementary or secondary | Pre-KG-12 | 767 | 12.3 | Nonsectarian |
| Northwood Academy | 6.5 |
Regular elementary or secondary | KG-12 | 819 | 12.5 | Other |
| Northwood Academy | 6.5 |
Regular elementary or secondary | KG-12 | 815 | 12.5 | Christian (no specific denomination) |
| Northwood Academy | 6.7 |
Regular elementary or secondary | Pre-KG-12 | 803 | 34.0 | Christian (no specific denomination) |
| Riverbend Christian Academy | 7.3 |
Regular elementary or secondary | Pre-KG-12 | 95 | 11.9 | Baptist |
| Ferndale Baptist School | 10.8 |
Regular elementary or secondary | Pre-KG-12 | 98 | 8.6 | Baptist |
| Capers Preparatory Christian Academy | 14.5 |
Regular elementary or secondary | KG-11 | 44 | 6.3 | Christian (no specific denomination) |
| St Pauls Academy | 16.3 |
Regular elementary or secondary | Pre-KG-12 | 84 | 8.4 | Nonsectarian |
| Porter-gaud School | 17.5 |
Regular elementary or secondary | KG-12 | 917 | 7.8 | Episcopal |
| James Island Christian School | 17.8 |
Regular elementary or secondary | Pre-KG-12 | 210 | 9.6 | Christian (no specific denomination) |
| St John's Christian Academy | 18.1 |
Regular elementary or secondary | Pre-KG-12 | 355 | 12.5 | Christian (no specific denomination) |
| Charleston Collegiate School | 18.5 |
Regular elementary or secondary | Pre-KG-12 | 250 | 7.5 | Nonsectarian |
| First Baptist Church School | 18.8 |
Regular elementary or secondary | Pre-KG-12 | 487 | 10.4 | Baptist |
| Trident Academy | 20.0 |
Special education | KG-12 | 88 | 2.7 | Nonsectarian |
| First Baptist Church School | 21.1 |
Regular elementary or secondary | Pre-KG-12 | 218 | 4.6 | Baptist |
