| Star Academy | 7.2 |
Special education | 3-11 | 69 | 11.9 | Nonsectarian |
| James R Sylla/sunny Hills Services | 7.6 |
Special education | Ungraded-Ungraded | 31 | 6.1 | Nonsectarian |
| San Domenico School | 7.8 |
Regular elementary or secondary | KG-12 | 533 | 8.1 | Roman Catholic |
| Mulberry Classroom | 9.7 |
Special education | KG-11 | 18 | 3.5 | Nonsectarian |
| Oak Hill School | 10.3 |
Special education | 1-12 | 20 | 5.0 | Nonsectarian |
| North Bay Christian Academy | 13.2 |
Regular elementary or secondary | KG-12 | 84 | 9.8 | Christian (no specific denomination) |
| St John Of San Francisco Orthodox Academy | 14.9 |
Regular elementary or secondary | KG-12 | 48 | 3.7 | Other |
| Erikson School | 15.2 |
Special education | 4-12 | 21 | 7.0 | Nonsectarian |
| Lisa Kampner Hebrew Academy | 15.6 |
Regular elementary or secondary | Pre-KG-12 | 132 | 6.7 | Jewish |
| San Francisco Waldorf School | 16.3 |
Special program emphasis | KG-12 | 407 | 10.3 | Nonsectarian |
| Sterne School | 16.3 |
Special education | 6-12 | 50 | 4.4 | Nonsectarian |
| Hergl School | 16.6 |
Special education | Ungraded-Ungraded | 8 | 8.0 | Nonsectarian |
| Lycee Francais La Perouse - San Francisco Campus | 16.7 |
Special program emphasis | Pre-KG-12 | 864 | 24.0 | Nonsectarian |
| Elim Christian School/colegio Evangelico Elim | 17.6 |
Regular elementary or secondary | KG-12 | 44 | 7.3 | Christian (no specific denomination) |
| Family Christian Academy | 18.4 |
Regular elementary or secondary | Pre-KG-12 | 7 | 3.9 | Pentecostal |
| Sand Paths Academy | 19.0 |
Special education | 6-12 | 26 | 4.9 | Nonsectarian |
| A Better Chance School/cal Autism Foundation | 19.5 |
Special education | 1-12 | 37 | 6.2 | Nonsectarian |
| King's Academy | 19.6 |
Regular elementary or secondary | 1-12 | 42 | 1.7 | Christian (no specific denomination) |
| San Francisco Christian School | 19.9 |
Regular elementary or secondary | Pre-KG-12 | 224 | 14.0 | Baptist |
| Cornerstone Academy | 20.0 |
Regular elementary or secondary | Pre-KG-12 | 1058 | 13.6 | Baptist |
| Rise Institute | 20.1 |
Special education | 4-12 | 44 | 14.7 | Nonsectarian |
| Spectrum Center - Tara Hills | 20.1 |
Special education | Ungraded-Ungraded | 104 | 9.4 | Nonsectarian |
| Arlington Christian School | 20.2 |
Regular elementary or secondary | KG-12 | 49 | 9.2 | Baptist |
| Montessori Schools Of Petaluma | 20.6 |
Montessori | Ungraded-Ungraded | 65 | 13.0 | Nonsectarian |
| Joshua Marie Cameron Academy | 20.7 |
Special education | 6-12 | 12 | 6.0 | Nonsectarian |
| Beyt Hasepher | 20.8 |
Alternative/other | 1-12 | 19 | 2.4 | Christian (no specific denomination) |
| East Bay Waldorf School | 21.0 |
Special program emphasis | KG-12 | 269 | 7.3 | Nonsectarian |
| Bethel Christian Academy | 21.2 |
Regular elementary or secondary | KG-12 | 85 | 13.9 | Baptist |
| El Sobrante Christian School | 21.3 |
Regular elementary or secondary | KG-12 | 399 | 12.3 | Assembly of God |
| Calvary Christian Academy | 21.4 |
Regular elementary or secondary | Pre-KG-12 | 150 | 12.5 | Christian (no specific denomination) |
| Via Center | 21.5 |
Special education | Ungraded-Ungraded | 18 | 9.0 | Nonsectarian |
| Sr Martin College Preparatory School | 22.0 |
Regular elementary or secondary | 6-12 | 29 | 7.6 | Other |
| Pentecostal Way Of Truth Academy | 22.7 |
Regular elementary or secondary | KG-12 | 15 | 1.6 | Nonsectarian |
| Asa Academy | 23.1 |
Regular elementary or secondary | 6-12 | 49 | 3.4 | Nonsectarian |
| St Andrew Missionary Baptist Church Pvt School | 23.6 |
Special program emphasis | KG-10 | 45 | 22.5 | Baptist |
| Roger Williams Academy | 23.7 |
Regular elementary or secondary | 1-12 | 25 | 8.1 | Baptist |
| Highlands Christian Schools | 24.9 |
Regular elementary or secondary | Pre-KG-12 | 613 | 17.3 | Christian (no specific denomination) |
