| Sacred Heart School | 1.6 |
Regular elementary or secondary | KG-8 | 247 | 17.0 | Roman Catholic |
| Hughson Christian School | 9.0 |
Regular elementary or secondary | Pre-KG-8 | 27 | 8.2 | Church of Christ |
| Kiddie Kingdom Daycare Center | 9.8 |
Early childhood program/child care center | Pre-KG-KG | 15 | 15.0 | Nonsectarian |
| Brighter Futures Therapeutic Learning Center | 11.5 |
Special education | 4-4 | 3 | 3.0 | Seventh-Day Adventist |
| Sierra Vista Elementary | 13.6 |
Special education | KG-4 | 23 | 11.5 | Nonsectarian |
| Small World Christian School | 13.8 |
Regular elementary or secondary | Pre-KG-3 | 46 | 15.3 | Christian (no specific denomination) |
| Kindercare Learning Center Inc | 13.9 |
Early childhood program/child care center | Pre-KG-KG | 5 | 5.0 | Nonsectarian |
| Sierra Vista Learning Center | 13.9 |
Special education | 1-8 | 39 | 9.8 | Nonsectarian |
| St Peter Lutheran School | 14.0 |
Regular elementary or secondary | Pre-KG-8 | 19 | 7.3 | Wisconsin Evangelical Lutheran Synod |
| A Step Ahead Academic Academy | 14.4 |
Early childhood program/child care center | Pre-KG-KG | 4 | 2.0 | Nonsectarian |
| St Stanislaus Elem School | 14.7 |
Regular elementary or secondary | Pre-KG-8 | 223 | 15.0 | Roman Catholic |
| Orangeburg Christian School | 14.8 |
Regular elementary or secondary | Pre-KG-8 | 75 | 9.9 | Baptist |
| Grace Lutheran School | 15.2 |
Regular elementary or secondary | Pre-KG-8 | 128 | 11.8 | Lutheran Church - Missouri Synod |
| Our Lady Of Fatima Elem School | 15.4 |
Regular elementary or secondary | KG-8 | 261 | 23.5 | Roman Catholic |
| Abc Reign Accelerated Learning Private School | 15.5 |
Regular elementary or secondary | KG-6 | 16 | 16.0 | Nonsectarian |
| Sacred Heart Catholic School | 15.6 |
Regular elementary or secondary | Pre-KG-8 | 241 | 20.8 | Roman Catholic |
| St Anthony School | 15.7 |
Regular elementary or secondary | Pre-KG-8 | 115 | 17.4 | Roman Catholic |
| King's Christian Academy | 16.0 |
Regular elementary or secondary | 2-6 | 8 | 5.0 | Christian (no specific denomination) |
| Montessori School Of Modesto | 17.5 |
Montessori | Pre-KG-KG | 16 | 2.2 | Nonsectarian |
| Our Lady Of Miracles Catholic School | 17.6 |
Regular elementary or secondary | KG-8 | 166 | 16.6 | Roman Catholic |
| Kindercare | 17.6 |
Early childhood program/child care center | Pre-KG-KG | 4 | 2.1 | Nonsectarian |
| Foster-moore Christian School | 20.0 |
Regular elementary or secondary | KG-8 | 20 | 10.0 | Seventh-Day Adventist |
| Modesto Christian Elementary School | 21.1 |
Regular elementary or secondary | KG-4 | 160 | 17.0 | Assembly of God |
| St Luke's Episcopal School | 23.2 |
Regular elementary or secondary | Pre-KG-5 | 66 | 12.2 | Episcopal |
| Merced Christian School | 23.7 |
Regular elementary or secondary | Pre-KG-8 | 147 | 11.8 | Christian (no specific denomination) |
| Merced Montessori School | 23.8 |
Montessori | Pre-KG-KG | 5 | 3.1 | Nonsectarian |
| Alexander Street Montessori School | 24.0 |
Montessori | Pre-KG-KG | 5 | 2.6 | Nonsectarian |
| Our Lady Of Mercy School | 24.9 |
Regular elementary or secondary | Pre-KG-8 | 342 | 20.6 | Roman Catholic |
