| St Marys School | 0.0 |
Regular elementary or secondary | Pre-KG-8 | 366 | 15.5 | Roman Catholic |
| St Mary's - Marian | 0.0 |
Regular elementary or secondary | Pre-KG-8 | 366 | 14.9 | Roman Catholic |
| Owatonna Montessori Childrens House | 0.9 |
Montessori | Pre-KG-KG | 7 | 7.0 | Nonsectarian |
| St Isidore Elementary School | 9.3 |
Regular elementary or secondary | Pre-KG-5 | 15 | 7.1 | Roman Catholic |
| Parkside Christian School | 13.7 |
Regular elementary or secondary | KG-8 | 9 | 4.5 | Seventh-Day Adventist |
| Sacred Heart School | 14.1 |
Regular elementary or secondary | Pre-KG-4 | 158 | 15.3 | Roman Catholic |
| Divine Mercy Catholic School | 14.9 |
Regular elementary or secondary | Pre-KG-6 | 281 | 14.5 | Roman Catholic |
| Faribault Lutheran School | 15.2 |
Regular elementary or secondary | KG-8 | 161 | 14.9 | Lutheran Church - Missouri Synod |
| Maranatha Adventist School | 18.0 |
Regular elementary or secondary | 4-8 | 13 | 6.5 | Seventh-Day Adventist |
| Trinity Lutheran School | 18.5 |
Regular elementary or secondary | KG-8 | 29 | 9.3 | Lutheran Church - Missouri Synod |
| Grace Lutheran School | 18.7 |
Regular elementary or secondary | Pre-KG-4 | 16 | 5.3 | Lutheran Church - Missouri Synod |
| Hollandale Christian School | 22.1 |
Regular elementary or secondary | KG-8 | 77 | 12.8 | Calvinist |
| Trinity Lutheran School | 24.1 |
Regular elementary or secondary | Pre-KG-8 | 111 | 13.2 | Lutheran Church - Missouri Synod |
