| St Paul Academy - Summit | 1.3 |
Regular elementary or secondary | KG-12 | 866 | 8.7 | Nonsectarian |
| Lake Country School | 4.3 |
Montessori | KG-9 | 243 | 10.9 | Nonsectarian |
| Christ's Household Of Faith | 4.4 |
Regular elementary or secondary | Pre-KG-12 | 143 | 6.0 | Christian (no specific denomination) |
| St Agnes School | 4.5 |
Regular elementary or secondary | KG-12 | 419 | 13.3 | Roman Catholic |
| Second Foundation School | 4.5 |
Alternative/other | Ungraded-Ungraded | 28 | 14.0 | Nonsectarian |
| Convent Of The Visitation School | 5.0 |
Regular elementary or secondary | Pre-KG-12 | 558 | 11.1 | Roman Catholic |
| St Bernards School | 5.8 |
Regular elementary or secondary | 1-12 | 370 | 8.7 | Roman Catholic |
| Calvary United Pentecostal Academy (calvary Chris | 6.7 |
Regular elementary or secondary | 2-12 | 15 | 13.6 | Pentecostal |
| Faith Baptist Christian School | 6.8 |
Regular elementary or secondary | Pre-KG-12 | 63 | 5.2 | Baptist |
| The Whole Learning School | 7.5 |
Special education | Ungraded-Ungraded | 14 | 4.7 | Nonsectarian |
| Groves Academy | 7.6 |
Special education | 2-12 | 181 | 5.6 | Nonsectarian |
| Breck School | 8.1 |
Regular elementary or secondary | Pre-KG-12 | 1159 | 10.4 | Episcopal |
| Metropolitan Open School | 8.3 |
Alternative/other | Ungraded-Ungraded | 4 | 3.1 | Nonsectarian |
| Maranatha Christian Academy | 9.3 |
Regular elementary or secondary | Pre-KG-12 | 649 | 15.6 | Christian (no specific denomination) |
| Bethany Academy | 9.5 |
Regular elementary or secondary | KG-12 | 254 | 13.7 | Christian (no specific denomination) |
| Mounds Park Academy | 10.2 |
Regular elementary or secondary | Pre-KG-12 | 639 | 10.2 | Nonsectarian |
| Al-amal School | 10.7 |
Regular elementary or secondary | Pre-KG-12 | 352 | 13.9 | Islamic |
| New Life Academy | 11.4 |
Regular elementary or secondary | Pre-KG-12 | 616 | 14.1 | Christian (no specific denomination) |
| Abi Christian Academy | 11.5 |
Regular elementary or secondary | Ungraded-Ungraded | 25 | 10.0 | Pentecostal |
| Hope Christian Academy | 11.7 |
Regular elementary or secondary | KG-12 | 84 | 12.9 | Christian (no specific denomination) |
| Fourth Baptist Christian School | 12.2 |
Regular elementary or secondary | Pre-KG-12 | 232 | 12.7 | Baptist |
| Woodcrest Baptist Academy | 12.2 |
Regular elementary or secondary | Pre-KG-12 | 176 | 15.4 | Baptist |
| The International School Of Minnesota | 12.2 |
Regular elementary or secondary | Pre-KG-12 | 460 | 9.5 | Nonsectarian |
| My Favorite Place Montessori School Llc | 12.7 |
Montessori | Ungraded-Ungraded | 21 | 21.0 | Nonsectarian |
| St Annes Academy | 13.2 |
Regular elementary or secondary | 1-12 | 57 | 6.6 | Roman Catholic |
| Minnetonka Christian Academy | 13.3 |
Regular elementary or secondary | KG-12 | 141 | 11.8 | Seventh-Day Adventist |
| Glory Academy | 14.4 |
Regular elementary or secondary | KG-9 | 26 | 5.9 | Pentecostal |
| Southview Christian School | 14.4 |
Regular elementary or secondary | Pre-KG-9 | 29 | 14.5 | Seventh-Day Adventist |
| Maranatha Christian Academy | 15.1 |
Regular elementary or secondary | Pre-KG-12 | 647 | 18.5 | Christian (no specific denomination) |
| Providence Academy | 15.7 |
Regular elementary or secondary | Pre-KG-12 | 786 | 12.4 | Roman Catholic |
| Heritage Christian Academy | 17.6 |
Regular elementary or secondary | Pre-KG-12 | 543 | 15.2 | Other Lutheran |
| Prior Lake Christian School | 18.2 |
Regular elementary or secondary | KG-12 | 88 | 11.7 | Baptist |
| Coon Rapids Christian | 18.3 |
Regular elementary or secondary | KG-12 | 42 | 14.0 | Baptist |
| Christian Life School | 19.4 |
Regular elementary or secondary | Pre-KG-12 | 152 | 11.3 | Assembly of God |
| Meadow Creek Christian School | 21.7 |
Regular elementary or secondary | Pre-KG-12 | 617 | 16.4 | Christian (no specific denomination) |
| Bunker Hills Academy | 21.8 |
Regular elementary or secondary | Pre-KG-10 | 95 | 10.7 | Christian (no specific denomination) |
