| Immanuel Lutheran School | 1.5 |
Regular elementary or secondary | Pre-KG-8 | 85 | 12.5 | Wisconsin Evangelical Lutheran Synod |
| Children's House Of Manitowoc | 1.6 |
Montessori | Pre-KG-KG | 1 | 1.0 | Nonsectarian |
| St Francis De Sales Elem School | 1.7 |
Regular elementary or secondary | KG-5 | 202 | 12.7 | Roman Catholic |
| First German Evangelical Lutheran School | 2.6 |
Regular elementary or secondary | Pre-KG-8 | 81 | 12.5 | Wisconsin Evangelical Lutheran Synod |
| Bethany Ev Lutheran School | 3.1 |
Regular elementary or secondary | KG-8 | 116 | 12.1 | Wisconsin Evangelical Lutheran Synod |
| St Frances Cabrini Middle School | 3.1 |
Regular elementary or secondary | 6-8 | 181 | 14.6 | Roman Catholic |
| St Francis Xavier School | 3.5 |
Regular elementary or secondary | Pre-KG-5 | 134 | 12.8 | Roman Catholic |
| St John's Lutheran School | 4.2 |
Regular elementary or secondary | KG-8 | 71 | 11.6 | Lutheran Church - Missouri Synod |
| St Peter The Fisherman Catholic School | 4.6 |
Regular elementary or secondary | Pre-KG-8 | 174 | 11.7 | Roman Catholic |
| St Johns Lutheran School | 7.7 |
Regular elementary or secondary | 1-8 | 107 | 16.2 | Wisconsin Evangelical Lutheran Synod |
| St Peters Lutheran School | 8.0 |
Regular elementary or secondary | Pre-KG-8 | 36 | 10.9 | Wisconsin Evangelical Lutheran Synod |
| St Mary/st Michael School | 11.2 |
Regular elementary or secondary | Pre-KG-8 | 62 | 10.2 | Roman Catholic |
| St Mary's & St Michael's Elementary School | 11.2 |
Regular elementary or secondary | Pre-KG-8 | 62 | 9.7 | Roman Catholic |
| St John Lutheran School | 13.1 |
Regular elementary or secondary | Pre-KG-8 | 44 | 11.6 | Wisconsin Evangelical Lutheran Synod |
| St John-st James Lutheran School | 15.4 |
Regular elementary or secondary | Pre-KG-8 | 40 | 9.1 | Wisconsin Evangelical Lutheran Synod |
| St Gregory School | 16.4 |
Regular elementary or secondary | Pre-KG-8 | 68 | 8.1 | Roman Catholic |
| Zion Lutheran School Of Wayside | 17.6 |
Regular elementary or secondary | Pre-KG-8 | 125 | 13.7 | Lutheran Church - Missouri Synod |
| All Saints School | 18.2 |
Regular elementary or secondary | Pre-KG-8 | 84 | 12.3 | Roman Catholic |
| Morrison Zion Lutheran School | 20.4 |
Regular elementary or secondary | Pre-KG-8 | 88 | 17.6 | Wisconsin Evangelical Lutheran Synod |
| Trinity Evang Lutheran School | 21.0 |
Regular elementary or secondary | Pre-KG-8 | 108 | 15.4 | Lutheran Church - Missouri Synod |
| Holy Family School | 21.5 |
Regular elementary or secondary | Pre-KG-8 | 75 | 6.9 | Roman Catholic |
| Immanuel Evangelical Lutheran School Of Shirley | 22.4 |
Regular elementary or secondary | KG-7 | 13 | 5.2 | Other Lutheran |
| Trinity Lutheran School | 22.5 |
Regular elementary or secondary | Pre-KG-8 | 38 | 8.8 | Lutheran Church - Missouri Synod |
| St Pauls Lutheran School | 22.8 |
Regular elementary or secondary | Pre-KG-8 | 65 | 13.5 | Wisconsin Evangelical Lutheran Synod |
| Trinity Lutheran School | 23.2 |
Regular elementary or secondary | Pre-KG-8 | 59 | 9.8 | Wisconsin Evangelical Lutheran Synod |
| Holy Rosary Elementary School | 24.0 |
Regular elementary or secondary | KG-8 | 114 | 9.6 | Roman Catholic |
| Divine Savior Catholic School | 24.5 |
Regular elementary or secondary | Pre-KG-4 | 73 | 11.2 | Roman Catholic |
| St Paul Lutheran School | 24.5 |
Regular elementary or secondary | Pre-KG-8 | 37 | 7.4 | Lutheran Church - Missouri Synod |
| Sheboygan Christian School | 24.8 |
Regular elementary or secondary | Pre-KG-8 | 168 | 16.0 | Christian (no specific denomination) |
