| Apple School | 0.0 |
Early childhood program/child care center | Pre-KG-KG | 1 | 0.9 | Nonsectarian |
| Christian Chapel Academy | 1.5 |
Regular elementary or secondary | Pre-KG-8 | 153 | 12.9 | Assembly of God |
| Childrens House Montessori Of Columbia | 3.3 |
Montessori | Pre-KG-1 | 16 | 8.4 | Nonsectarian |
| Islamic School Of Columbia-missouri | 3.9 |
Regular elementary or secondary | Pre-KG-5 | 30 | 4.3 | Islamic |
| Good Shepherd Lutheran School | 4.2 |
Regular elementary or secondary | KG-7 | 94 | 14.2 | Lutheran Church - Missouri Synod |
| Columbia Catholic School | 5.2 |
Regular elementary or secondary | KG-8 | 611 | 17.3 | Roman Catholic |
| St Martin Elementary School | 20.7 |
Regular elementary or secondary | KG-8 | 220 | 17.7 | Roman Catholic |
| Kingdom Christian Academy | 21.1 |
Regular elementary or secondary | Pre-KG-8 | 80 | 10.1 | Christian (no specific denomination) |
| St Joseph Cathedral School | 21.8 |
Regular elementary or secondary | Pre-KG-8 | 410 | 17.4 | Roman Catholic |
| Zion Lutheran School | 22.0 |
Regular elementary or secondary | 1-8 | 25 | 11.9 | Lutheran Church - Missouri Synod |
| Ss Peter & Paul School | 22.5 |
Regular elementary or secondary | KG-8 | 173 | 15.3 | Roman Catholic |
| St Peter Interparish Catholic School | 23.4 |
Regular elementary or secondary | KG-KG | 60 | 2.0 | Roman Catholic |
| Trinity Lutheran School | 24.1 |
Regular elementary or secondary | KG-8 | 319 | 15.1 | Lutheran Church - Missouri Synod |
| Immaculate Conception School | 24.6 |
Regular elementary or secondary | KG-8 | 468 | 13.4 | Roman Catholic |
| Moreau Montessori School | 24.7 |
Montessori | Pre-KG-3 | 34 | 8.7 | Nonsectarian |
