| Christ Community Lutheran School | 0.0 |
Regular elementary or secondary | Pre-KG-8 | 53 | 8.4 | Lutheran Church - Missouri Synod |
| Eagle's Nest Christian Academy | 2.6 |
Regular elementary or secondary | Pre-KG-5 | 12 | 2.0 | Christian (no specific denomination) |
| Royal Palm Academy | 4.6 |
Regular elementary or secondary | Pre-KG-8 | 159 | 8.8 | Roman Catholic |
| Cedar Montessori School | 4.8 |
Montessori | Pre-KG-5 | 36 | 7.2 | Nonsectarian |
| Grace Community School | 4.8 |
Regular elementary or secondary | KG-5 | 71 | 23.7 | Other |
| St Elizabeth Seton School | 5.6 |
Regular elementary or secondary | Pre-KG-8 | 208 | 14.2 | Roman Catholic |
| Naples Christian Academy | 6.2 |
Regular elementary or secondary | Pre-KG-8 | 156 | 10.5 | Christian (no specific denomination) |
| The Village School | 7.2 |
Regular elementary or secondary | Pre-KG-8 | 258 | 12.3 | Methodist |
| Naples Sda School | 7.5 |
Regular elementary or secondary | Pre-KG-8 | 26 | 8.7 | Seventh-Day Adventist |
| Able Academy | 8.3 |
Special education | Pre-KG-2 | 13 | 1.6 | Nonsectarian |
| Moorings Presbyterian Preschool | 8.8 |
Early childhood program/child care center | Pre-KG-Trans. KG | 7 | 5.4 | Presbyterian |
| Grace Community School | 9.7 |
Early childhood program/child care center | Pre-KG-KG | 14 | 4.8 | Christian (no specific denomination) |
| St Ann School | 10.8 |
Regular elementary or secondary | Pre-KG-8 | 304 | 11.4 | Roman Catholic |
| Steps To The Future Christian Academy | 19.2 |
Regular elementary or secondary | Pre-KG-8 | 6 | 3.0 | Baptist |
| Island Montessori Academy | 21.0 |
Montessori | Pre-KG-KG | 1 | 0.4 | Nonsectarian |
| Creative Minds Montessori School | 21.7 |
Montessori | Pre-KG-2 | 9 | 3.6 | Nonsectarian |
| Summit Christian School | 21.7 |
Regular elementary or secondary | Pre-KG-8 | 91 | 9.2 | Presbyterian |
| Noonan Elementary Academy Of Fort Myers | 22.5 |
Regular elementary or secondary | Pre-KG-8 | 151 | 8.9 | Roman Catholic |
| Montessori School Of Fort Myers | 24.0 |
Montessori | Pre-KG-KG | 4 | 1.7 | Nonsectarian |
| Crestwell School (crestwell Higher Learning) | 24.4 |
Regular elementary or secondary | Pre-KG-8 | 162 | 10.8 | Nonsectarian |
| Harvest Christian Academy | 24.4 |
Regular elementary or secondary | Pre-KG-8 | 21 | 4.9 | Church of God |
