| Cedar Montessori School | 1.3 |
Montessori | Pre-KG-5 | 36 | 7.2 | Nonsectarian |
| Eagle's Nest Christian Academy | 2.0 |
Regular elementary or secondary | Pre-KG-5 | 12 | 2.0 | Christian (no specific denomination) |
| Christ Community Lutheran School | 4.6 |
Regular elementary or secondary | Pre-KG-8 | 53 | 8.4 | Lutheran Church - Missouri Synod |
| Grace Community School | 5.4 |
Early childhood program/child care center | Pre-KG-KG | 14 | 4.8 | Christian (no specific denomination) |
| The Village School | 5.8 |
Regular elementary or secondary | Pre-KG-8 | 258 | 12.3 | Methodist |
| Naples Sda School | 6.0 |
Regular elementary or secondary | Pre-KG-8 | 26 | 8.7 | Seventh-Day Adventist |
| Grace Community School | 7.0 |
Regular elementary or secondary | KG-5 | 71 | 23.7 | Other |
| St Elizabeth Seton School | 8.0 |
Regular elementary or secondary | Pre-KG-8 | 208 | 14.2 | Roman Catholic |
| Moorings Presbyterian Preschool | 8.0 |
Early childhood program/child care center | Pre-KG-Trans. KG | 7 | 5.4 | Presbyterian |
| Naples Christian Academy | 8.3 |
Regular elementary or secondary | Pre-KG-8 | 156 | 10.5 | Christian (no specific denomination) |
| Able Academy | 8.8 |
Special education | Pre-KG-2 | 13 | 1.6 | Nonsectarian |
| St Ann School | 10.8 |
Regular elementary or secondary | Pre-KG-8 | 304 | 11.4 | Roman Catholic |
| Summit Christian School | 17.6 |
Regular elementary or secondary | Pre-KG-8 | 91 | 9.2 | Presbyterian |
| Creative Minds Montessori School | 18.4 |
Montessori | Pre-KG-2 | 9 | 3.6 | Nonsectarian |
| Noonan Elementary Academy Of Fort Myers | 19.0 |
Regular elementary or secondary | Pre-KG-8 | 151 | 8.9 | Roman Catholic |
| Montessori School Of Fort Myers | 20.4 |
Montessori | Pre-KG-KG | 4 | 1.7 | Nonsectarian |
| Crestwell School (crestwell Higher Learning) | 20.8 |
Regular elementary or secondary | Pre-KG-8 | 162 | 10.8 | Nonsectarian |
| Steps To The Future Christian Academy | 21.4 |
Regular elementary or secondary | Pre-KG-8 | 6 | 3.0 | Baptist |
| Renaissance School Inc | 22.2 |
Montessori | Pre-KG-8 | 44 | 4.4 | Nonsectarian |
| Renaissance School | 22.2 |
Montessori | Pre-KG-8 | 45 | 5.9 | Nonsectarian |
| Grace Community School | 22.6 |
Regular elementary or secondary | Pre-KG-5 | 40 | 20.0 | Presbyterian |
| Ft Myers Christian School | 22.8 |
Regular elementary or secondary | Pre-KG-8 | 416 | 14.6 | Assembly of God |
| Island Montessori Academy | 23.1 |
Montessori | Pre-KG-KG | 1 | 0.4 | Nonsectarian |
| Harvest Christian Academy | 23.2 |
Regular elementary or secondary | Pre-KG-8 | 21 | 4.9 | Church of God |
| St Michael Lutheran School | 23.5 |
Regular elementary or secondary | Pre-KG-8 | 442 | 14.3 | Lutheran Church - Missouri Synod |
| Christ Lutheran School | 24.4 |
Regular elementary or secondary | KG-8 | 152 | 12.4 | Evangelical Lutheran Church in America |
| St Andrew Catholic School | 24.7 |
Regular elementary or secondary | Pre-KG-8 | 385 | 15.4 | Roman Catholic |
| Providence Christian School | 24.8 |
Regular elementary or secondary | Pre-KG-8 | 107 | 7.7 | Presbyterian |
| Apostolic Revival Center | 24.8 |
Regular elementary or secondary | Pre-KG-5 | 28 | 9.3 | Pentecostal |
