| Our Savior New American School | 4.1 |
Regular elementary or secondary | Pre-KG-12 | 235 | 5.2 | Lutheran Church - Missouri Synod |
| Cleary School For The Deaf | 5.0 |
Special education | Pre-KG-12 | 45 | 2.9 | Nonsectarian |
| Smithtown Christian School | 5.3 |
Regular elementary or secondary | Pre-KG-12 | 525 | 13.0 | Assembly of God |
| Developmental Disabilities Institute | 6.2 |
Special education | Ungraded-Ungraded | 228 | 6.3 | Nonsectarian |
| Gersh Academy | 6.5 |
Special education | 3-12 | 56 | 3.6 | Nonsectarian |
| Long Island Baptist Academy | 7.9 |
Regular elementary or secondary | KG-12 | 34 | 7.1 | Baptist |
| The Children's Center At Ucp | 8.2 |
Special education | Ungraded-Ungraded | 54 | 4.9 | Nonsectarian |
| Nysarc Inc-suffolk Chapter | 8.2 |
Special education | Pre-KG-Pre-KG | 95 | 9.5 | Nonsectarian |
| Sappo School | 8.5 |
Special education | 5-12 | 35 | 5.8 | Nonsectarian |
| Life Skills School | 9.7 |
Special education | Ungraded-Ungraded | 70 | 10.0 | Nonsectarian |
| Nassau Suffolk Services For Autism | 9.9 |
Special education | Ungraded-Ungraded | 25 | 6.2 | Nonsectarian |
| Academy Of St Joseph | 10.7 |
Regular elementary or secondary | KG-12 | 366 | 8.0 | Roman Catholic |
| Ascent | 13.3 |
Special education | KG-11 | 23 | 2.1 | Nonsectarian |
| Upper Room Christian School | 13.3 |
Regular elementary or secondary | KG-12 | 310 | 9.0 | Christian (no specific denomination) |
| The Center For Developmental Disabilities Inc | 18.6 |
Special education | Ungraded-Ungraded | 106 | 5.3 | Nonsectarian |
| East Woods School | 18.9 |
Regular elementary or secondary | Pre-KG-9 | 239 | 5.3 | Nonsectarian |
| Bethesda Sda Elementary | 19.9 |
Regular elementary or secondary | Pre-KG-10 | 123 | 15.8 | Seventh-Day Adventist |
| Leonard E Burket Christian School | 19.9 |
Regular elementary or secondary | Pre-KG-12 | 135 | 10.0 | Assembly of God |
| Variety Child Learning Center | 20.0 |
Special education | Pre-KG-Pre-KG | 59 | 1.1 | Nonsectarian |
| New Jerusalem Christian Academy | 20.2 |
Regular elementary or secondary | 2-12 | 45 | 15.0 | Pentecostal |
| Long Island Lutheran Middle & High School | 22.2 |
Regular elementary or secondary | 6-12 | 614 | 13.1 | Lutheran Church - Missouri Synod |
| The Hagedorn Little Village School | 22.6 |
Special education | Pre-KG-Pre-KG | 60 | 7.7 | Nonsectarian |
| Portledge School | 23.4 |
Regular elementary or secondary | Pre-KG-12 | 376 | 6.2 | Nonsectarian |
| Ahrc Childrens Education Center | 23.9 |
Special education | Ungraded-Ungraded | 180 | 7.8 | Nonsectarian |
| Friends Academy | 23.9 |
Regular elementary or secondary | Pre-KG-12 | 717 | 7.6 | Friends |
| Mosaic School | 24.3 |
Special education | Ungraded-Ungraded | 3 | 0.9 | Nonsectarian |
