| Mountain Peak Charter | 1.1 |
Regular School | KG-12 | 18.7 | -3% |
| Bayshore Preparatory Charter | 1.3 |
Regular School | KG-12 | 18.9 | -13% |
| North Region Court | 2.8 |
Other/Alternative School | KG-12 | 17.0 | 94% |
| National University Academy | 3.3 |
Regular School | 6-12 | 17.9 | - |
| National University Academy, Armona | 3.3 |
Regular School | KG-12 | 20.0 | - |
| Dehesa Charter | 5.6 |
Regular School | KG-12 | 21.3 | 8% |
| Discovery Hills And Valley | 6.1 |
Special Education School | 1-12 | 6.9 | 95% |
| Sierra Vista High | 7.0 |
Special Education School | 6-12 | 10.6 | 97% |
| Carlsbad Seaside Academy | 7.4 |
Other/Alternative School | KG-12 | 15.0 | - |
| Guajome Learning Center | 7.7 |
Regular School | KG-12 | 33.1 | 6% |
| Guajome Park Academy Charter | 7.7 |
Regular School | 6-12 | 24.6 | 44% |
| San Diego Neighborhood Homeschools | 8.1 |
Regular School | KG-12 | 97.0 | 38% |
| Pacific View Charter | 8.5 |
Regular School | KG-12 | 20.6 | 54% |
| Valley Center Prep | 13.3 |
Other/Alternative School | KG-12 | 19.3 | -31% |
| Audeo Charter | 15.4 |
Regular School | 6-12 | 33.0 | -3% |
| Preuss School Ucsd | 17.1 |
Regular School | 6-12 | 22.4 | -2% |
| All Tribes Charter | 18.2 |
Regular School | KG-12 | - | 71% |
| Ramona Community | 20.3 |
Regular School | KG-12 | 26.5 | 14% |
| Rai Online Charter | 20.3 |
Regular School | KG-12 | 20.8 | - |
| John Muir | 20.8 |
Regular School | KG-12 | 17.8 | -4% |
| Mt. Everest Academy | 21.1 |
Other/Alternative School | KG-12 | 14.1 | - |
| Riley/new Dawn | 21.8 |
Special Education School | KG-12 | 8.5 | - |
| East County Academy Of Learning | 22.1 |
Special Education School | 6-12 | 10.6 | -48% |
| Whittier/del Sol Academy | 22.2 |
Regular School | KG-12 | 2.9 | 97% |
| Mesa Region Court | 23.0 |
Other/Alternative School | KG-12 | 10.9 | - |
| San Diego County Special Education | 24.5 |
Special Education School | KG-12 | 9.0 | 93% |
