| Audeo Charter | 3.4 |
Regular School | 6-12 | 33.0 | -3% |
| John Muir | 4.4 |
Regular School | KG-12 | 17.8 | -4% |
| Mt. Everest Academy | 4.9 |
Other/Alternative School | KG-12 | 14.1 | - |
| Whittier/del Sol Academy | 5.6 |
Regular School | KG-12 | 2.9 | 97% |
| Riley/new Dawn | 5.7 |
Special Education School | KG-12 | 8.5 | - |
| Mesa Region Court | 7.4 |
Other/Alternative School | KG-12 | 10.9 | - |
| San Diego County Special Education | 8.1 |
Special Education School | KG-12 | 9.0 | 93% |
| Hope Region Community | 11.4 |
Other/Alternative School | KG-12 | 21.0 | 95% |
| Metro Region Court | 11.6 |
Other/Alternative School | KG-12 | 17.5 | -51% |
| Metro Region Community | 11.6 |
Other/Alternative School | Pre-KG-12 | 22.4 | - |
| Alba | 12.4 |
Other/Alternative School | 1-12 | 2.3 | - |
| Diego Hills Charter | 12.7 |
Regular School | KG-12 | 37.2 | - |
| Gompers Preparatory Academy | 13.9 |
Regular School | 6-12 | 19.3 | - |
| East Region Court | 14.6 |
Other/Alternative School | KG-12 | 15.0 | -30% |
| Learning Choice Academy | 15.3 |
Regular School | KG-12 | 21.7 | 99% |
| South Region Community | 15.8 |
Other/Alternative School | Pre-KG-12 | 21.8 | - |
| East County Academy Of Learning | 16.7 |
Special Education School | 6-12 | 10.6 | -48% |
| Diego Valley Public | 16.9 |
Regular School | KG-12 | 18.9 | - |
| Pivot Charter School - San Diego | 17.1 |
Regular School | 6-12 | 15.6 | 96% |
| Liberty Charter | 17.1 |
Regular School | KG-12 | 16.4 | 38% |
| San Diego Scpa | 17.4 |
Regular School | 6-12 | 23.0 | -1% |
| Mountain Peak Charter | 17.8 |
Regular School | KG-12 | 18.7 | -3% |
| Bayshore Preparatory Charter | 18.1 |
Regular School | KG-12 | 18.9 | -13% |
| North Region Court | 18.7 |
Other/Alternative School | KG-12 | 17.0 | 94% |
| Dehesa Charter | 18.8 |
Regular School | KG-12 | 21.3 | 8% |
| San Diego Virtual | 19.2 |
Regular School | KG-12 | 12.7 | - |
| Carlsbad Seaside Academy | 20.1 |
Other/Alternative School | KG-12 | 15.0 | - |
| National University Academy | 20.2 |
Regular School | 6-12 | 17.9 | - |
| National University Academy, Armona | 20.2 |
Regular School | KG-12 | 20.0 | - |
| Discovery Hills And Valley | 22.5 |
Special Education School | 1-12 | 6.9 | 95% |
| Ramona Community | 23.0 |
Regular School | KG-12 | 26.5 | 14% |
| San Diego Neighborhood Homeschools | 23.2 |
Regular School | KG-12 | 97.0 | 38% |
| Pacific View Charter | 23.4 |
Regular School | KG-12 | 20.6 | 54% |
| Greater San Diego Academy | 23.5 |
Regular School | KG-12 | 22.8 | 39% |
| Sierra Vista High | 23.7 |
Special Education School | 6-12 | 10.6 | 97% |
| Guajome Park Academy Charter | 24.4 |
Regular School | 6-12 | 24.6 | 44% |
| Guajome Learning Center | 24.4 |
Regular School | KG-12 | 33.1 | 6% |
